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Protein
Submitted name:

Uncharacterized protein

Gene

C27A12.2

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
ORF Names:C27A12.2Imported, CELE_C27A12.2Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome I

Organism-specific databases

WormBaseiC27A12.2; CE45540; WBGene00016154.

PTM / Processingi

Proteomic databases

PaxDbiO01961.

Interactioni

Protein-protein interaction databases

DIPiDIP-25195N.
IntActiO01961. 4 interactions.
MINTiMINT-1115651.
STRINGi6239.C27A12.2.

Structurei

3D structure databases

ProteinModelPortaliO01961.
SMRiO01961. Positions 46-182, 421-527, 563-602.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini71 – 9828C2H2-typeInterPro annotationAdd
BLAST
Domaini99 – 12628C2H2-typeInterPro annotationAdd
BLAST
Domaini429 – 45628C2H2-typeInterPro annotationAdd
BLAST
Domaini457 – 48428C2H2-typeInterPro annotationAdd
BLAST
Domaini485 – 51531C2H2-typeInterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiKOG1721. Eukaryota.
COG5048. LUCA.
GeneTreeiENSGT00840000129682.
HOGENOMiHOG000022208.
InParanoidiO01961.
OMAiHETENEC.
OrthoDBiEOG7RZ5TX.
PhylomeDBiO01961.

Family and domain databases

Gene3Di3.30.160.60. 5 hits.
InterProiIPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
SMARTiSM00355. ZnF_C2H2. 8 hits.
[Graphical view]
PROSITEiPS00028. ZINC_FINGER_C2H2_1. 5 hits.
PS50157. ZINC_FINGER_C2H2_2. 5 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O01961-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAESCVKPQL PRPRIPNIRV FQPTTRIPTF TYEQFNESVE ILPSRPECLY
60 70 80 90 100
RRNDPTNRSY RMKKRPPAQI YHCVQCNKHI KYPSKITEHI RKHTGEKPNV
110 120 130 140 150
CSICNISFSQ AHTLKTHMQQ HAHEKPYKCS FCTAEFLNVY EKNEHEEQHM
160 170 180 190 200
HHPNHGETME ENNATTSQFI QVAEPTIQAE PCQIYECSEM CGFQSYEEAE
210 220 230 240 250
VVEHMTVTHY QQTVQNGLIL QDFNGEPEPI YEFYEEQYVQ QVPTEIEETP
260 270 280 290 300
TIKQQSIPYE NLHFEHVEAA PGPSEPHLQV VAEGEILYDG EEIVDISNGK
310 320 330 340 350
SLKEEIQNGD ANIYGMIQDL EEEVEDIGNE DEERERVRIM VNPNPPKRGT
360 370 380 390 400
KSLRDHHEAT AATMEMIVDA SILELAEPSR HLKQGYPPIS KRKNTGKRAE
410 420 430 440 450
NLDWIIDAVA KGVDVSEASP HHRKKPTLHK CEYCGRVDKY PSKIRAHMRT
460 470 480 490 500
HTGEKPFKCE ICGMAFSQKT PMRLHLRRHF DQKPYECDVD GCKERFVSGA
510 520 530 540 550
ILKMHVEKKH LNKKKYVCSR GCGRVFSSAY NQKHHEKKCE QTYVTWVEGE
560 570 580 590 600
QQSVESGEED EESNGEYPDD DEEYMDDMID ASTSQPINRV VEHFSEEPVF

LHQ
Length:603
Mass (Da):69,912
Last modified:February 8, 2011 - v2
Checksum:i18B85F9F558B6F41
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284601 Genomic DNA. Translation: CCD61209.1.
RefSeqiNP_491745.2. NM_059344.3.
UniGeneiCel.19190.

Genome annotation databases

EnsemblMetazoaiC27A12.2; C27A12.2; WBGene00016154.
GeneIDi172281.
KEGGicel:CELE_C27A12.2.
UCSCiC27A12.2. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284601 Genomic DNA. Translation: CCD61209.1.
RefSeqiNP_491745.2. NM_059344.3.
UniGeneiCel.19190.

3D structure databases

ProteinModelPortaliO01961.
SMRiO01961. Positions 46-182, 421-527, 563-602.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

DIPiDIP-25195N.
IntActiO01961. 4 interactions.
MINTiMINT-1115651.
STRINGi6239.C27A12.2.

Proteomic databases

PaxDbiO01961.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiC27A12.2; C27A12.2; WBGene00016154.
GeneIDi172281.
KEGGicel:CELE_C27A12.2.
UCSCiC27A12.2. c. elegans.

Organism-specific databases

CTDi172281.
WormBaseiC27A12.2; CE45540; WBGene00016154.

Phylogenomic databases

eggNOGiKOG1721. Eukaryota.
COG5048. LUCA.
GeneTreeiENSGT00840000129682.
HOGENOMiHOG000022208.
InParanoidiO01961.
OMAiHETENEC.
OrthoDBiEOG7RZ5TX.
PhylomeDBiO01961.

Miscellaneous databases

NextBioi874825.

Family and domain databases

Gene3Di3.30.160.60. 5 hits.
InterProiIPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
SMARTiSM00355. ZnF_C2H2. 8 hits.
[Graphical view]
PROSITEiPS00028. ZINC_FINGER_C2H2_1. 5 hits.
PS50157. ZINC_FINGER_C2H2_2. 5 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
    Caenorhabditis elegans Sequencing Consortium
    Sulson J.E., Waterston R.
    Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Bristol N2Imported.

Entry informationi

Entry nameiO01961_CAEEL
AccessioniPrimary (citable) accession number: O01961
Entry historyi
Integrated into UniProtKB/TrEMBL: July 1, 1997
Last sequence update: February 8, 2011
Last modified: May 11, 2016
This is version 142 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.