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Protein
Submitted name:

Uncharacterized protein

Gene

let-391

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:let-391Imported
Synonyms:tag-146Imported
ORF Names:C27A12.3Imported, CELE_C27A12.3Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome I

Organism-specific databases

WormBaseiC27A12.3; CE38999; WBGene00006492; let-391.

PTM / Processingi

Proteomic databases

PaxDbiO01960.

Expressioni

Gene expression databases

BgeeiWBGene00006492.

Interactioni

Protein-protein interaction databases

IntActiO01960. 27 interactors.
STRINGi6239.C27A12.3.

Structurei

3D structure databases

ProteinModelPortaliO01960.
SMRiO01960.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini57 – 84C2H2-typeInterPro annotationAdd BLAST28
Domaini85 – 113C2H2-typeInterPro annotationAdd BLAST29
Domaini114 – 142C2H2-typeInterPro annotationAdd BLAST29
Domaini268 – 295C2H2-typeInterPro annotationAdd BLAST28
Domaini296 – 324C2H2-typeInterPro annotationAdd BLAST29
Domaini325 – 354C2H2-typeInterPro annotationAdd BLAST30
Domaini355 – 380C2H2-typeInterPro annotationAdd BLAST26

Phylogenomic databases

eggNOGiKOG1721. Eukaryota.
COG5048. LUCA.
GeneTreeiENSGT00860000134242.
HOGENOMiHOG000022207.
InParanoidiO01960.
OMAiESNARID.
OrthoDBiEOG091G02KC.
PhylomeDBiO01960.

Family and domain databases

Gene3Di3.30.160.60. 7 hits.
InterProiIPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
SMARTiSM00355. ZnF_C2H2. 7 hits.
[Graphical view]
PROSITEiPS00028. ZINC_FINGER_C2H2_1. 7 hits.
PS50157. ZINC_FINGER_C2H2_2. 7 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O01960-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKNNEDLDEN SDAIFEEWAA ECTPDAQKEH EELEEIVKIP DSTYRKKKGN
60 70 80 90 100
QKLPTVTTCE VCGVALKYPS RIMEHMRTHT GEKPYECDIC GMRFTQRTPM
110 120 130 140 150
INHFRVQHMG DLPFLCNFGC GKRFVNNSRR TAHELSHNGL KRAGPARPYL
160 170 180 190 200
KPVKKIVCPS MDMDILSNSA LANYISPPTI DSIFQSDPST SSSSPSQFQS
210 220 230 240 250
SNQTTKQSIY PSEKEMEKAA ISNARIDDVI NTVLARVLAP IDEEIPIEEP
260 270 280 290 300
EKAPQKRAYI SNRRATLAQC NICGLMLKHP SKIADHIRTH TGEKPFECGE
310 320 330 340 350
CGLSLSKASS LKVHIRRMHT GERPFECTWR CGLSFVTDSV RKEHEMTVHT
360 370 380 390 400
GIKRYTCVVK GCNAVFARRV YLMRHRKNAH PELFTPIFDH VQVNHEESQD
410 420 430 440 450
SVIVYEDDHE QNNQIIMLTG DGDDVKILAH FEDDEEEFVE QGGSMEDQKT

VHF
Length:453
Mass (Da):51,526
Last modified:September 22, 2009 - v3
Checksum:iE62A59129E09CAED
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284601 Genomic DNA. Translation: CCD61201.1.
RefSeqiNP_491744.3. NM_059343.6.
UniGeneiCel.20353.

Genome annotation databases

EnsemblMetazoaiC27A12.3; C27A12.3; WBGene00006492.
GeneIDi182953.
KEGGicel:CELE_C27A12.3.
UCSCiC27A12.3. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284601 Genomic DNA. Translation: CCD61201.1.
RefSeqiNP_491744.3. NM_059343.6.
UniGeneiCel.20353.

3D structure databases

ProteinModelPortaliO01960.
SMRiO01960.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiO01960. 27 interactors.
STRINGi6239.C27A12.3.

Proteomic databases

PaxDbiO01960.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiC27A12.3; C27A12.3; WBGene00006492.
GeneIDi182953.
KEGGicel:CELE_C27A12.3.
UCSCiC27A12.3. c. elegans.

Organism-specific databases

CTDi182953.
WormBaseiC27A12.3; CE38999; WBGene00006492; let-391.

Phylogenomic databases

eggNOGiKOG1721. Eukaryota.
COG5048. LUCA.
GeneTreeiENSGT00860000134242.
HOGENOMiHOG000022207.
InParanoidiO01960.
OMAiESNARID.
OrthoDBiEOG091G02KC.
PhylomeDBiO01960.

Gene expression databases

BgeeiWBGene00006492.

Family and domain databases

Gene3Di3.30.160.60. 7 hits.
InterProiIPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
SMARTiSM00355. ZnF_C2H2. 7 hits.
[Graphical view]
PROSITEiPS00028. ZINC_FINGER_C2H2_1. 7 hits.
PS50157. ZINC_FINGER_C2H2_2. 7 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiO01960_CAEEL
AccessioniPrimary (citable) accession number: O01960
Entry historyi
Integrated into UniProtKB/TrEMBL: July 1, 1997
Last sequence update: September 22, 2009
Last modified: November 30, 2016
This is version 138 of the entry and version 3 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.