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Protein
Submitted name:

Ribosomal Protein, Small subunit

Gene

rps-10

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • determination of adult lifespan Source: WormBase
  • ribosomal small subunit assembly Source: GO_Central

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal proteinImported

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-6791226. Major pathway of rRNA processing in the nucleolus and cytosol.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-CEL-72702. Ribosomal scanning and start codon recognition.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Submitted name:
Ribosomal Protein, Small subunitImported
Gene namesi
Name:rps-10Imported
ORF Names:CELE_D1007.6Imported, D1007.6Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome I

Organism-specific databases

WormBaseiD1007.6; CE09041; WBGene00004479; rps-10.

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Proteomic databases

EPDiO01869.
PaxDbiO01869.
PeptideAtlasiO01869.
PRIDEiO01869.

Expressioni

Gene expression databases

BgeeiWBGene00004479.

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
pah-1P909253EBI-314419,EBI-318020

Protein-protein interaction databases

DIPiDIP-25833N.
IntActiO01869. 33 interactors.
MINTiMINT-1039592.
STRINGi6239.D1007.6.2.

Structurei

3D structure databases

ProteinModelPortaliO01869.
SMRiO01869.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini3 – 95S10_plectinInterPro annotationAdd BLAST93

Phylogenomic databases

eggNOGiKOG3344. Eukaryota.
COG5045. LUCA.
GeneTreeiENSGT00440000034918.
HOGENOMiHOG000216624.
InParanoidiO01869.
KOiK02947.
OMAiQPKHDEI.
OrthoDBiEOG091G0QTW.
PhylomeDBiO01869.

Family and domain databases

InterProiView protein in InterPro
IPR005326. S10_plectin_N.
PfamiView protein in Pfam
PF03501. S10_plectin. 1 hit.

Sequencei

Sequence statusi: Complete.

O01869-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MFIPKSHTKL IYEYLFNEGV TVAKKDFNAK THPNIEGVSN LEVIKTLKSL
60 70 80 90 100
ASRELVKEQF AWRHYYWYLT DAGILYLREY LALPAEIVPA TIKTKPREIR
110 120 130 140
VPHEDRAPRA AQGEKGDREA YRTEKVTEAG PGGAPVYRAG FGRGAPPPQ
Length:149
Mass (Da):16,870
Last modified:July 1, 1997 - v1
Checksum:iD7F37F1D5E6C3935
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284601 Genomic DNA. Translation: CCD67317.1.
PIRiT30925.
RefSeqiNP_491398.1. NM_058997.4.
UniGeneiCel.9108.

Genome annotation databases

EnsemblMetazoaiD1007.6.1; D1007.6.1; WBGene00004479.
D1007.6.2; D1007.6.2; WBGene00004479.
GeneIDi172061.
KEGGicel:CELE_D1007.6.
UCSCiD1007.6.2. c. elegans.

Similar proteinsi

Entry informationi

Entry nameiO01869_CAEEL
AccessioniPrimary (citable) accession number: O01869
Entry historyiIntegrated into UniProtKB/TrEMBL: July 1, 1997
Last sequence update: July 1, 1997
Last modified: September 27, 2017
This is version 119 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported