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Protein
Submitted name:

SCRaTch (Zinc finger transcriptional repressor) homolog

Gene

scrt-1

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
SCRaTch (Zinc finger transcriptional repressor) homologImported
Gene namesi
Name:scrt-1Imported
ORF Names:C55C2.1Imported, CELE_C55C2.1Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome I

Organism-specific databases

WormBaseiC55C2.1; CE45821; WBGene00016948; scrt-1.

PTM / Processingi

Proteomic databases

PaxDbiO01830.

Interactioni

Protein-protein interaction databases

STRINGi6239.C55C2.1.

Structurei

3D structure databases

ProteinModelPortaliO01830.
SMRiO01830. Positions 63-173.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini94 – 12128C2H2-typeInterPro annotationAdd
BLAST
Domaini122 – 14928C2H2-typeInterPro annotationAdd
BLAST
Domaini150 – 17728C2H2-typeInterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiKOG2462. Eukaryota.
ENOG41106JS. LUCA.
GeneTreeiENSGT00390000011027.
HOGENOMiHOG000113915.
InParanoidiO01830.
OMAiKHEESKC.
OrthoDBiEOG79GT8G.

Family and domain databases

Gene3Di3.30.160.60. 3 hits.
InterProiIPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
PfamiPF00096. zf-C2H2. 2 hits.
[Graphical view]
SMARTiSM00355. ZnF_C2H2. 3 hits.
[Graphical view]
PROSITEiPS00028. ZINC_FINGER_C2H2_1. 2 hits.
PS50157. ZINC_FINGER_C2H2_2. 3 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O01830-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSSYEVPPFP VLSTPFLLQY IPSLIEEVQK KYNSQVRLIP IPYLPASSSS
60 70 80 90 100
PSLPSFSLHS DSPSLSPSTT VTSYSTPSSP DGKQLKFATC SPVCQCKVCG
110 120 130 140 150
KRFSRQWLLQ GHLRTHTGEK PFQCEICSKR FADKSNLRAH IQTHSGTKPH
160 170
KCPRCGKSFA LKSYLSKHEE SKCLPRMD
Length:178
Mass (Da):19,892
Last modified:May 3, 2011 - v3
Checksum:i4A025FE458014104
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284601 Genomic DNA. Translation: CCD68126.1.
RefSeqiNP_491001.2. NM_058600.2.
UniGeneiCel.26218.

Genome annotation databases

EnsemblMetazoaiC55C2.1; C55C2.1; WBGene00016948.
GeneIDi183848.
KEGGicel:CELE_C55C2.1.
UCSCiC55C2.1. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284601 Genomic DNA. Translation: CCD68126.1.
RefSeqiNP_491001.2. NM_058600.2.
UniGeneiCel.26218.

3D structure databases

ProteinModelPortaliO01830.
SMRiO01830. Positions 63-173.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi6239.C55C2.1.

Proteomic databases

PaxDbiO01830.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiC55C2.1; C55C2.1; WBGene00016948.
GeneIDi183848.
KEGGicel:CELE_C55C2.1.
UCSCiC55C2.1. c. elegans.

Organism-specific databases

CTDi183848.
WormBaseiC55C2.1; CE45821; WBGene00016948; scrt-1.

Phylogenomic databases

eggNOGiKOG2462. Eukaryota.
ENOG41106JS. LUCA.
GeneTreeiENSGT00390000011027.
HOGENOMiHOG000113915.
InParanoidiO01830.
OMAiKHEESKC.
OrthoDBiEOG79GT8G.

Miscellaneous databases

NextBioi922578.

Family and domain databases

Gene3Di3.30.160.60. 3 hits.
InterProiIPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
PfamiPF00096. zf-C2H2. 2 hits.
[Graphical view]
SMARTiSM00355. ZnF_C2H2. 3 hits.
[Graphical view]
PROSITEiPS00028. ZINC_FINGER_C2H2_1. 2 hits.
PS50157. ZINC_FINGER_C2H2_2. 3 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
    Caenorhabditis elegans Sequencing Consortium
    Sulson J.E., Waterston R.
    Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Bristol N2Imported.

Entry informationi

Entry nameiO01830_CAEEL
AccessioniPrimary (citable) accession number: O01830
Entry historyi
Integrated into UniProtKB/TrEMBL: July 1, 1997
Last sequence update: May 3, 2011
Last modified: March 16, 2016
This is version 124 of the entry and version 3 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.