Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Sjogren Syndrome antigen B homolog

Gene

ssb-1

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRNA-bindingPROSITE-ProRule annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Sjogren Syndrome antigen B homologImported
Gene namesi
Name:ssb-1Imported
ORF Names:C44E4.4Imported, CELE_C44E4.4Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome I

Organism-specific databases

WormBaseiC44E4.4 ; CE08718 ; WBGene00016653 ; ssb-1

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Proteomic databases

EPDiO01806
PaxDbiO01806
PeptideAtlasiO01806
PRIDEiO01806

Expressioni

Gene expression databases

BgeeiWBGene00016653

Interactioni

Protein-protein interaction databases

STRINGi6239.C44E4.4

Structurei

3D structure databases

ProteinModelPortaliO01806
SMRiO01806
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini6 – 98HTH La-type RNA-bindingInterPro annotationAdd BLAST93
Domaini110 – 178RRMInterPro annotationAdd BLAST69

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili192 – 219Sequence analysisAdd BLAST28

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiENOG410IQXQ Eukaryota
COG5193 LUCA
GeneTreeiENSGT00830000128380
HOGENOMiHOG000022257
InParanoidiO01806
KOiK11090
OMAiGRHFDSR
OrthoDBiEOG091G0K95
PhylomeDBiO01806

Family and domain databases

Gene3Di1.10.10.10, 1 hit
3.30.70.330, 2 hits
InterProiView protein in InterPro
IPR006630 La_HTH
IPR014886 La_RRM
IPR002344 Lupus_La
IPR012677 Nucleotide-bd_a/b_plait_sf
IPR035979 RBD_domain_sf
IPR000504 RRM_dom
IPR036388 WH-like_DNA-bd_sf
IPR036390 WH_DNA-bd_sf
PfamiView protein in Pfam
PF05383 La, 1 hit
PF00076 RRM_1, 1 hit
PF08777 RRM_3, 1 hit
PRINTSiPR00302 LUPUSLA
SMARTiView protein in SMART
SM00715 LA, 1 hit
SM00360 RRM, 1 hit
SUPFAMiSSF46785 SSF46785, 1 hit
SSF54928 SSF54928, 2 hits
PROSITEiView protein in PROSITE
PS50961 HTH_LA, 1 hit
PS50102 RRM, 1 hit

Sequencei

Sequence statusi: Complete.

O01806-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGETAAAVHD DADQKIIKQL EYYFGNINLP RDKFLQEKLK EDDGWVPITT
60 70 80 90 100
MLNFNRLASI SKDTEKIANA VKNSGSGIIS VSEDNQKIRR NEENPVPENS
110 120 130 140 150
LEYWQKIKHR TVYMKGFSTD TQLDDIIQWA NQFGETENVL MRRLKPGDRT
160 170 180 190 200
FKGSVFITYK TREEAEAAQK AEVKFGETEL TKMMQDEYWT LKNKETKEAR
210 220 230 240 250
AANKAAKSAK NTSEAIESEK AQHAVRYEKG LILAVDGLGP DSTIDSIKTF
260 270 280 290 300
FKLHGSVGYV AHENGGKTAE IRFNNDSEGA QKAWDNAVAA GTDGKVILQE
310 320 330 340 350
AELSARVLDG EEEEKYWTEF NARKNQRQGG GRGGRGGRGG RGGRGGRGGR
360 370 380 390
GGRGGRGDRR GDKRSANDEG ADGSDEPKAK RTVFAEDGAP AAAAAE
Length:396
Mass (Da):43,631
Last modified:July 1, 1997 - v1
Checksum:iA2D828A4AFAA3C34
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284601 Genomic DNA Translation: CCD67305.1
PIRiT30953
RefSeqiNP_491411.1, NM_059010.4
UniGeneiCel.8098

Genome annotation databases

EnsemblMetazoaiC44E4.4.1; C44E4.4.1; WBGene00016653
C44E4.4.2; C44E4.4.2; WBGene00016653
GeneIDi172070
KEGGicel:CELE_C44E4.4
UCSCiC44E4.4 c. elegans

Similar proteinsi

Entry informationi

Entry nameiO01806_CAEEL
AccessioniPrimary (citable) accession number: O01806
Entry historyiIntegrated into UniProtKB/TrEMBL: July 1, 1997
Last sequence update: July 1, 1997
Last modified: May 23, 2018
This is version 138 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health