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Protein
Submitted name:

Uncharacterized protein

Gene

C44E4.4

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
ORF Names:C44E4.4Imported, CELE_C44E4.4Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome I

Organism-specific databases

WormBaseiC44E4.4; CE08718; WBGene00016653.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Proteomic databases

EPDiO01806.
PaxDbiO01806.
PRIDEiO01806.

Expressioni

Gene expression databases

BgeeiWBGene00016653.

Interactioni

Protein-protein interaction databases

STRINGi6239.C44E4.4.

Structurei

3D structure databases

ProteinModelPortaliO01806.
SMRiO01806. Positions 13-180.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini6 – 9893HTH La-type RNA-bindingInterPro annotationAdd
BLAST
Domaini110 – 17869RRM (RNA recognition motif)InterPro annotationAdd
BLAST

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili192 – 21928Sequence analysisAdd
BLAST

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiENOG410IQXQ. Eukaryota.
COG5193. LUCA.
GeneTreeiENSGT00830000128380.
HOGENOMiHOG000022257.
InParanoidiO01806.
KOiK11090.
OMAiAVWRRYF.
OrthoDBiEOG091G0K95.
PhylomeDBiO01806.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
3.30.70.330. 2 hits.
InterProiIPR014886. La_RRM.
IPR002344. Lupus_La.
IPR006630. Lupus_La_RNA-bd.
IPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF05383. La. 1 hit.
PF00076. RRM_1. 1 hit.
PF08777. RRM_3. 1 hit.
[Graphical view]
PRINTSiPR00302. LUPUSLA.
SMARTiSM00715. LA. 1 hit.
SM00360. RRM. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
SSF54928. SSF54928. 2 hits.
PROSITEiPS50961. HTH_LA. 1 hit.
PS50102. RRM. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O01806-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGETAAAVHD DADQKIIKQL EYYFGNINLP RDKFLQEKLK EDDGWVPITT
60 70 80 90 100
MLNFNRLASI SKDTEKIANA VKNSGSGIIS VSEDNQKIRR NEENPVPENS
110 120 130 140 150
LEYWQKIKHR TVYMKGFSTD TQLDDIIQWA NQFGETENVL MRRLKPGDRT
160 170 180 190 200
FKGSVFITYK TREEAEAAQK AEVKFGETEL TKMMQDEYWT LKNKETKEAR
210 220 230 240 250
AANKAAKSAK NTSEAIESEK AQHAVRYEKG LILAVDGLGP DSTIDSIKTF
260 270 280 290 300
FKLHGSVGYV AHENGGKTAE IRFNNDSEGA QKAWDNAVAA GTDGKVILQE
310 320 330 340 350
AELSARVLDG EEEEKYWTEF NARKNQRQGG GRGGRGGRGG RGGRGGRGGR
360 370 380 390
GGRGGRGDRR GDKRSANDEG ADGSDEPKAK RTVFAEDGAP AAAAAE
Length:396
Mass (Da):43,631
Last modified:July 1, 1997 - v1
Checksum:iA2D828A4AFAA3C34
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284601 Genomic DNA. Translation: CCD67305.1.
PIRiT30953.
RefSeqiNP_491411.1. NM_059010.4.
UniGeneiCel.8098.

Genome annotation databases

EnsemblMetazoaiC44E4.4; C44E4.4; WBGene00016653.
GeneIDi172070.
KEGGicel:CELE_C44E4.4.
UCSCiC44E4.4. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284601 Genomic DNA. Translation: CCD67305.1.
PIRiT30953.
RefSeqiNP_491411.1. NM_059010.4.
UniGeneiCel.8098.

3D structure databases

ProteinModelPortaliO01806.
SMRiO01806. Positions 13-180.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi6239.C44E4.4.

Proteomic databases

EPDiO01806.
PaxDbiO01806.
PRIDEiO01806.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiC44E4.4; C44E4.4; WBGene00016653.
GeneIDi172070.
KEGGicel:CELE_C44E4.4.
UCSCiC44E4.4. c. elegans.

Organism-specific databases

CTDi172070.
WormBaseiC44E4.4; CE08718; WBGene00016653.

Phylogenomic databases

eggNOGiENOG410IQXQ. Eukaryota.
COG5193. LUCA.
GeneTreeiENSGT00830000128380.
HOGENOMiHOG000022257.
InParanoidiO01806.
KOiK11090.
OMAiAVWRRYF.
OrthoDBiEOG091G0K95.
PhylomeDBiO01806.

Gene expression databases

BgeeiWBGene00016653.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
3.30.70.330. 2 hits.
InterProiIPR014886. La_RRM.
IPR002344. Lupus_La.
IPR006630. Lupus_La_RNA-bd.
IPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF05383. La. 1 hit.
PF00076. RRM_1. 1 hit.
PF08777. RRM_3. 1 hit.
[Graphical view]
PRINTSiPR00302. LUPUSLA.
SMARTiSM00715. LA. 1 hit.
SM00360. RRM. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
SSF54928. SSF54928. 2 hits.
PROSITEiPS50961. HTH_LA. 1 hit.
PS50102. RRM. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiO01806_CAEEL
AccessioniPrimary (citable) accession number: O01806
Entry historyi
Integrated into UniProtKB/TrEMBL: July 1, 1997
Last sequence update: July 1, 1997
Last modified: September 7, 2016
This is version 122 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.