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Protein

60S ribosomal protein L7

Gene

rpl-7

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Binds to G-rich structures in 28S rRNA and in mRNAs. Plays a regulatory role in the translation apparatus; inhibits cell-free translation of mRNAs (By similarity).By similarity

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L7
Gene namesi
Name:rpl-7
ORF Names:F53G12.10
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome I

Organism-specific databases

WormBaseiF53G12.10; CE11024; WBGene00004418; rpl-7.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 24424460S ribosomal protein L7PRO_0000104636Add
BLAST

Proteomic databases

EPDiO01802.
PaxDbiO01802.

PTM databases

iPTMnetiO01802.

Interactioni

Protein-protein interaction databases

BioGridi37106. 12 interactions.
DIPiDIP-25881N.
IntActiO01802. 3 interactions.
MINTiMINT-212784.
STRINGi6239.F53G12.10.2.

Structurei

3D structure databases

ProteinModelPortaliO01802.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L30P family.Curated

Phylogenomic databases

eggNOGiKOG3184. Eukaryota.
COG1841. LUCA.
GeneTreeiENSGT00390000006213.
HOGENOMiHOG000170917.
InParanoidiO01802.
KOiK02937.
OMAiHINHCVL.
OrthoDBiEOG7K9K3X.
PhylomeDBiO01802.

Family and domain databases

Gene3Di3.30.1390.20. 2 hits.
InterProiIPR018038. Ribosomal_L30_CS.
IPR016082. Ribosomal_L30_ferredoxin-like.
IPR012988. Ribosomal_L30_N.
IPR005998. Ribosomal_L7_euk.
[Graphical view]
PfamiPF00327. Ribosomal_L30. 1 hit.
PF08079. Ribosomal_L30_N. 1 hit.
[Graphical view]
SUPFAMiSSF55129. SSF55129. 1 hit.
TIGRFAMsiTIGR01310. uL30_euk. 1 hit.
PROSITEiPS00634. RIBOSOMAL_L30. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O01802-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAPTKKVPQV PETVLKRRKQ RADARTKAAQ HKVTVAAKNK EKKTQYFKRA
60 70 80 90 100
EKYVQEYRNA QKEGLRLKRE AEAKGDFYVP AEHKVAFVVR IRGINQLHPK
110 120 130 140 150
PRKALQILRL RQINNGVFVK LNKATLPLLR IIEPYVAWGY PNNKTIHDLL
160 170 180 190 200
YKRGYAKVDG NRVPITDNTI VEQSLGKFNI ICLEDLAHEI ATVGPHFKEA
210 220 230 240
TNFLWPFKLN NPTGGWTKKT NHFVEGGDFG NREDQINNLL RKMV
Length:244
Mass (Da):28,132
Last modified:July 1, 1997 - v1
Checksum:i5073D697E90A8257
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FO081455 Genomic DNA. Translation: CCD71708.1.
PIRiT29034.
RefSeqiNP_490676.1. NM_058275.4.
UniGeneiCel.18647.

Genome annotation databases

EnsemblMetazoaiF53G12.10.1; F53G12.10.1; WBGene00004418.
F53G12.10.2; F53G12.10.2; WBGene00004418.
GeneIDi171602.
KEGGicel:CELE_F53G12.10.
UCSCiF53G12.10.2. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FO081455 Genomic DNA. Translation: CCD71708.1.
PIRiT29034.
RefSeqiNP_490676.1. NM_058275.4.
UniGeneiCel.18647.

3D structure databases

ProteinModelPortaliO01802.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi37106. 12 interactions.
DIPiDIP-25881N.
IntActiO01802. 3 interactions.
MINTiMINT-212784.
STRINGi6239.F53G12.10.2.

PTM databases

iPTMnetiO01802.

Proteomic databases

EPDiO01802.
PaxDbiO01802.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiF53G12.10.1; F53G12.10.1; WBGene00004418.
F53G12.10.2; F53G12.10.2; WBGene00004418.
GeneIDi171602.
KEGGicel:CELE_F53G12.10.
UCSCiF53G12.10.2. c. elegans.

Organism-specific databases

CTDi171602.
WormBaseiF53G12.10; CE11024; WBGene00004418; rpl-7.

Phylogenomic databases

eggNOGiKOG3184. Eukaryota.
COG1841. LUCA.
GeneTreeiENSGT00390000006213.
HOGENOMiHOG000170917.
InParanoidiO01802.
KOiK02937.
OMAiHINHCVL.
OrthoDBiEOG7K9K3X.
PhylomeDBiO01802.

Enzyme and pathway databases

ReactomeiR-CEL-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-CEL-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-CEL-72689. Formation of a pool of free 40S subunits.
R-CEL-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-CEL-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-CEL-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

PROiO01802.

Family and domain databases

Gene3Di3.30.1390.20. 2 hits.
InterProiIPR018038. Ribosomal_L30_CS.
IPR016082. Ribosomal_L30_ferredoxin-like.
IPR012988. Ribosomal_L30_N.
IPR005998. Ribosomal_L7_euk.
[Graphical view]
PfamiPF00327. Ribosomal_L30. 1 hit.
PF08079. Ribosomal_L30_N. 1 hit.
[Graphical view]
SUPFAMiSSF55129. SSF55129. 1 hit.
TIGRFAMsiTIGR01310. uL30_euk. 1 hit.
PROSITEiPS00634. RIBOSOMAL_L30. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
    The C. elegans sequencing consortium
    Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Bristol N2.

Entry informationi

Entry nameiRL7_CAEEL
AccessioniPrimary (citable) accession number: O01802
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 15, 1998
Last sequence update: July 1, 1997
Last modified: June 8, 2016
This is version 111 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.