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O01792 (O01792_CAEEL) Unreviewed, UniProtKB/TrEMBL

Last modified May 29, 2013. Version 107. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Protein LGC-51 EMBL CCD69304.1
Gene names
Name:lgc-51 EMBL CCD69304.1 WormBase F12B6.3
ORF Names:CELE_F12B6.3 EMBL CCD69304.1, F12B6.3 WormBase F12B6.3
OrganismCaenorhabditis elegans [Reference proteome] EMBL CCD69304.1
Taxonomic identifier6239 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Ecdysozoa › Nematoda › Chromadorea › Rhabditida › Rhabditoidea › Rhabditidae › Peloderinae › Caenorhabditis

Protein attributes

Sequence length469 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the ligand-gated ion channel (TC 1.A.9) family. [View classification] RuleBase RU000687

Sequences

Sequence LengthMass (Da)Tools
O01792 [UniParc].

Last modified May 2, 2006. Version 3.
Checksum: AEA555D4DFCEBCE1

FASTA46953,698
        10         20         30         40         50         60 
MCLFHFLAVI VTTFAQDEGS FVEKCTKPRL TPAAILDVIM ANYSRSLPGN PVGVQVEVTV 

        70         80         90        100        110        120 
QDVMELSVLS NSFTADIWFS SIWYDPRLAY SHLDNCRQNL SFDDRFEKLI WSPNVCIVNT 

       130        140        150        160        170        180 
KSAHVHRSPK PNVLLMLLPN GTIWLNYRIR VQSPCSMDLA RFPIDTQYCQ LVFESYSYNT 

       190        200        210        220        230        240 
ASVSVNWMAN PVTVLPEISL ADFDLSRYRT SRHTEVYKAG EWYRLTVEFE FTRKYGFYIL 

       250        260        270        280        290        300 
QVLYVPTYIS LFISWIAFCI DTKALPARIV LGVNSLMSLT FQFGNIIRSL PPVSYVKAID 

       310        320        330        340        350        360 
LWMCTCVGFI FASLLELAFV AYQDKKLILK SGKSNAAIST LVSYLKHFEP YHDVSSPPPP 

       370        380        390        400        410        420 
APLDEKKSMS RTTSTGTNRS RSELDGLDTK DLEEEIAEYR KLAYARKKWR LLDFGANVDR 

       430        440        450        460 
ISFIVFPLSQ RSMWFTGHIT FKTCGYPLGP DFNFFFFVIF VLTCSRISQ

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References

[1]"Genome sequence of the nematode C. elegans: a platform for investigating biology."
Caenorhabditis elegans Sequencing Consortium
Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Bristol N2 EMBL CCD69304.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		FO081123 Genomic DNA. Translation: CCD69304.1.
RefSeqNP_490946.3. NM_058545.3.
UniGeneCel.20343.

3D structure databases

ProteinModelPortalO01792.
SMRO01792. Positions 49-322.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaF12B6.3; F12B6.3; F12B6.3.
GeneID184377.
KEGGcel:CELE_F12B6.3.
UCSCF12B6.3. c. elegans.

Organism-specific databases

CTD184377.
WormBaseF12B6.3; CE39013; WBGene00017399; lgc-51.

Phylogenomic databases

eggNOGNOG263463.
GeneTreeENSGT00540000070314.
HOGENOMHOG000016259.
InParanoidO01792.
OMALFISWIA.

Family and domain databases

Gene3D2.70.170.10. 1 hit.
InterProIPR006028. GABAA_rcpt.
IPR006202. Neur_chan_lig-bd.
IPR006201. Neur_channel.
IPR006029. Neurotrans-gated_channel_TM.
IPR018000. Neurotransmitter_ion_chnl_CS.
IPR001610. PAC.
[Graphical view]
PANTHERPTHR18945. PTHR18945. 1 hit.
PfamPF02931. Neur_chan_LBD. 1 hit.
PF02932. Neur_chan_memb. 1 hit.
[Graphical view]
PRINTSPR00253. GABAARECEPTR.
PR00252. NRIONCHANNEL.
SMARTSM00086. PAC. 1 hit.
[Graphical view]
SUPFAMSSF90112. Neu_channel_TM. 1 hit.
SSF63712. Neur_chan_LBD. 1 hit.
PROSITEPS00236. NEUROTR_ION_CHANNEL. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio924526.

Entry information

Entry nameO01792_CAEEL
AccessionPrimary (citable) accession number: O01792
Entry history
Integrated into UniProtKB/TrEMBL: July 1, 1997
Last sequence update: May 2, 2006
Last modified: May 29, 2013
This is version 107 of the entry and version 3 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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