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Protein

Putative 40S ribosomal protein S4-like

Gene

C48B6.2

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

ReactomeiR-CEL-6791226. Major pathway of rRNA processing in the nucleolus.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative 40S ribosomal protein S4-like
Gene namesi
ORF Names:C48B6.2
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome I

Organism-specific databases

WormBaseiC48B6.2; CE08804; WBGene00016740.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Mitochondrion

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 183183Putative 40S ribosomal protein S4-likePRO_0000132705Add
BLAST

Proteomic databases

EPDiO01513.
PaxDbiO01513.

Expressioni

Gene expression databases

BgeeiWBGene00016740.

Interactioni

Protein-protein interaction databases

BioGridi37865. 1 interaction.
STRINGi6239.C48B6.2.1.

Structurei

3D structure databases

ProteinModelPortaliO01513.
SMRiO01513. Positions 40-165.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini108 – 17467S4 RNA-bindingPROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the ribosomal protein S4P family.Curated
Contains 1 S4 RNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiKOG4655. Eukaryota.
COG0522. LUCA.
GeneTreeiENSGT00550000075090.
HOGENOMiHOG000213883.
InParanoidiO01513.
KOiK14560.
OMAiKYHIEKR.
OrthoDBiEOG091G0QKK.
PhylomeDBiO01513.

Family and domain databases

Gene3Di3.10.290.10. 1 hit.
InterProiIPR022801. Ribosomal_S4/S9.
IPR001912. Ribosomal_S4/S9_N.
IPR002942. S4_RNA-bd.
[Graphical view]
PANTHERiPTHR11831. PTHR11831. 1 hit.
PfamiPF01479. S4. 1 hit.
[Graphical view]
SMARTiSM01390. Ribosomal_S4. 1 hit.
SM00363. S4. 1 hit.
[Graphical view]
PROSITEiPS50889. S4. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O01513-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVRKLKTHEQ KLLKKTDFMS WQVDQQGKQG DMLRKFYVKK REHYALYNTL
60 70 80 90 100
AAKSREVADL IKNLSESDPF RSKCTEDMLT KFYAAGLVPT SDTLERIGKV
110 120 130 140 150
TGASFARRRL PVVMRNIGMC ESVKTASDLV EQGHVRIGTK LVTDPAFMVT
160 170 180
RSSEDMITWT KASKIKKHVM DYNNTRDDFD LMD
Length:183
Mass (Da):21,077
Last modified:July 1, 1997 - v1
Checksum:i182ABAB5631A7919
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FO080896 Genomic DNA. Translation: CCD67579.1.
PIRiT28926.
RefSeqiNP_491972.1. NM_059571.5.
UniGeneiCel.20729.

Genome annotation databases

EnsemblMetazoaiC48B6.2; C48B6.2; WBGene00016740.
GeneIDi172420.
KEGGicel:CELE_C48B6.2.
UCSCiC48B6.2. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FO080896 Genomic DNA. Translation: CCD67579.1.
PIRiT28926.
RefSeqiNP_491972.1. NM_059571.5.
UniGeneiCel.20729.

3D structure databases

ProteinModelPortaliO01513.
SMRiO01513. Positions 40-165.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi37865. 1 interaction.
STRINGi6239.C48B6.2.1.

Proteomic databases

EPDiO01513.
PaxDbiO01513.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiC48B6.2; C48B6.2; WBGene00016740.
GeneIDi172420.
KEGGicel:CELE_C48B6.2.
UCSCiC48B6.2. c. elegans.

Organism-specific databases

CTDi172420.
WormBaseiC48B6.2; CE08804; WBGene00016740.

Phylogenomic databases

eggNOGiKOG4655. Eukaryota.
COG0522. LUCA.
GeneTreeiENSGT00550000075090.
HOGENOMiHOG000213883.
InParanoidiO01513.
KOiK14560.
OMAiKYHIEKR.
OrthoDBiEOG091G0QKK.
PhylomeDBiO01513.

Enzyme and pathway databases

ReactomeiR-CEL-6791226. Major pathway of rRNA processing in the nucleolus.

Miscellaneous databases

PROiO01513.

Gene expression databases

BgeeiWBGene00016740.

Family and domain databases

Gene3Di3.10.290.10. 1 hit.
InterProiIPR022801. Ribosomal_S4/S9.
IPR001912. Ribosomal_S4/S9_N.
IPR002942. S4_RNA-bd.
[Graphical view]
PANTHERiPTHR11831. PTHR11831. 1 hit.
PfamiPF01479. S4. 1 hit.
[Graphical view]
SMARTiSM01390. Ribosomal_S4. 1 hit.
SM00363. S4. 1 hit.
[Graphical view]
PROSITEiPS50889. S4. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYS4L_CAEEL
AccessioniPrimary (citable) accession number: O01513
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 15, 1998
Last sequence update: July 1, 1997
Last modified: September 7, 2016
This is version 102 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.