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O00268

- TAF4_HUMAN

UniProt

O00268 - TAF4_HUMAN

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Protein

Transcription initiation factor TFIID subunit 4

Gene
TAF4, TAF2C, TAF2C1, TAF4A, TAFII130, TAFII135
Organism
Homo sapiens (Human)
Status
Reviewed - Annotation score: 5 out of 5 - Experimental evidence at protein leveli

Functioni

Part of the TFIID complex, a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. Potentiates transcriptional activation by the AF-2S of the retinoic acid, vitamin D3 and thyroid hormone.

GO - Molecular functioni

  1. DNA binding Source: UniProtKB
  2. protein binding Source: UniProtKB
  3. sequence-specific DNA binding transcription factor activity Source: InterPro
  4. transcription coactivator activity Source: ProtInc

GO - Biological processi

  1. DNA-templated transcription, initiation Source: UniProtKB
  2. gene expression Source: Reactome
  3. ovarian follicle development Source: Ensembl
  4. positive regulation of transcription, DNA-templated Source: UniProtKB
  5. transcription elongation from RNA polymerase II promoter Source: Reactome
  6. transcription from RNA polymerase II promoter Source: Reactome
  7. transcription initiation from RNA polymerase II promoter Source: UniProtKB
  8. viral process Source: Reactome
Complete GO annotation...

Keywords - Biological processi

Host-virus interaction, Transcription, Transcription regulation

Enzyme and pathway databases

ReactomeiREACT_1655. RNA Polymerase II Transcription Pre-Initiation And Promoter Opening.
REACT_1851. RNA Polymerase II Transcription Initiation.
REACT_2089. RNA Polymerase II Promoter Escape.
REACT_22107. RNA Polymerase II Pre-transcription Events.
REACT_6233. Transcription of the HIV genome.
REACT_6253. RNA Polymerase II HIV Promoter Escape.
REACT_6332. HIV Transcription Initiation.
REACT_834. RNA Polymerase II Transcription Initiation And Promoter Clearance.

Names & Taxonomyi

Protein namesi
Recommended name:
Transcription initiation factor TFIID subunit 4
Alternative name(s):
RNA polymerase II TBP-associated factor subunit C
TBP-associated factor 4
Transcription initiation factor TFIID 130 kDa subunit
Short name:
TAF(II)130
Short name:
TAFII-130
Short name:
TAFII130
Transcription initiation factor TFIID 135 kDa subunit
Short name:
TAF(II)135
Short name:
TAFII-135
Short name:
TAFII135
Gene namesi
Name:TAF4
Synonyms:TAF2C, TAF2C1, TAF4A, TAFII130, TAFII135
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640: Chromosome 20

Organism-specific databases

HGNCiHGNC:11537. TAF4.

Subcellular locationi

GO - Cellular componenti

  1. cytoplasm Source: HPA
  2. MLL1 complex Source: UniProtKB
  3. nucleoplasm Source: Reactome
  4. nucleus Source: HPA
  5. transcription factor TFIID complex Source: MGI
  6. transcription factor TFTC complex Source: UniProtKB
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA36312.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 10851085Transcription initiation factor TFIID subunit 4PRO_0000118869Add
BLAST

Proteomic databases

MaxQBiO00268.
PaxDbiO00268.
PRIDEiO00268.

PTM databases

PhosphoSiteiO00268.

Expressioni

Gene expression databases

ArrayExpressiO00268.
BgeeiO00268.
CleanExiHS_TAF4.
GenevestigatoriO00268.

Organism-specific databases

HPAiCAB031484.
HPA008599.

Interactioni

Subunit structurei

TFIID is composed of TATA binding protein (TBP) and a number of TBP-associated factors (TAFs). Component of the TFTC-HAT complex, at least composed of TAF5L, TAF6L, TADA3L, SUPT3H, TAF2, TAF4, TAF5, GCN5L2/GCN5, TAF10 and TRRAP. Component of some MLL1/MLL complex, at least composed of the core components KMT2A/MLL1, ASH2L, HCFC1/HCF1, WDR5 and RBBP5, as well as the facultative components BAP18, CHD8, E2F6, HSP70, INO80C, KANSL1, LAS1L, MAX, MCRS1, MGA, MYST1/MOF, PELP1, PHF20, PRP31, RING2, RUVB1/TIP49A, RUVB2/TIP49B, SENP3, TAF1, TAF4, TAF6, TAF7, TAF9 and TEX10. Interacts with ATF7; the interaction inhibits ATF7-mediated tranactivation. Interacts with SV40 Large T antigen.5 Publications

Protein-protein interaction databases

BioGridi112737. 36 interactions.
DIPiDIP-35350N.
IntActiO00268. 8 interactions.
MINTiMINT-236922.
STRINGi9606.ENSP00000252996.

Structurei

Secondary structure

1
1085
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi585 – 60723
Beta strandi609 – 6124
Helixi614 – 62815
Helixi634 – 64411
Helixi653 – 66614
Helixi671 – 6777
Helixi875 – 88713
Turni888 – 8903
Helixi898 – 91821

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1H3OX-ray2.30A/C872-945[»]
2P6VX-ray2.00A575-679[»]
ProteinModelPortaliO00268.
SMRiO00268. Positions 583-679, 872-919.

Miscellaneous databases

EvolutionaryTraceiO00268.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini590 – 68798TAFHAdd
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi39 – 424Poly-His
Compositional biasi52 – 576Poly-Ala
Compositional biasi98 – 1014Poly-Gly
Compositional biasi142 – 1487Poly-Ala
Compositional biasi270 – 2778Poly-Pro
Compositional biasi333 – 3397Poly-Ala
Compositional biasi682 – 6854Poly-Pro
Compositional biasi810 – 8156Poly-Ala
Compositional biasi830 – 8334Poly-Asp

Sequence similaritiesi

Belongs to the TAF4 family.
Contains 1 TAFH (NHR1) domain.

Phylogenomic databases

eggNOGiNOG237595.
HOGENOMiHOG000154502.
HOVERGENiHBG058585.
InParanoidiO00268.
KOiK03129.
OMAiVVMNSHH.
PhylomeDBiO00268.
TreeFamiTF316520.

Family and domain databases

Gene3Di1.10.20.10. 1 hit.
InterProiIPR009072. Histone-fold.
IPR007900. TAF4.
IPR003894. TAFH_NHR1.
[Graphical view]
PfamiPF05236. TAF4. 1 hit.
PF07531. TAFH. 1 hit.
[Graphical view]
SMARTiSM00549. TAFH. 1 hit.
[Graphical view]
SUPFAMiSSF47113. SSF47113. 1 hit.
PROSITEiPS51119. TAFH. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

O00268-1 [UniParc]FASTAAdd to Basket

« Hide

MAAGSDLLDE VFFNSEVDEK VVSDLVGSLE SQLAASAAHH HHLAPRTPEV     50
RAAAAGALGN HVVSGSPAGA AGAGPAAPAE GAPGAAPEPP PAGRARPGGG 100
GPQRPGPPSP RRPLVPAGPA PPAAKLRPPP EGSAGSCAPV PAAAAVAAGP 150
EPAPAGPAKP AGPAALAARA GPGPGPGPGP GPGPGPGKPA GPGAAQTLNG 200
SAALLNSHHA AAPAVSLVNN GPAALLPLPK PAAPGTVIQT PPFVGAAAPP 250
APAAPSPPAA PAPAAPAAAP PPPPPAPATL ARPPGHPAGP PTAAPAVPPP 300
AAAQNGGSAG AAPAPAPAAG GPAGVSGQPG PGAAAAAPAP GVKAESPKRV 350
VQAAPPAAQT LAASGPASTA ASMVIGPTMQ GALPSPAAVP PPAPGTPTGL 400
PKGAAGAVTQ SLSRTPTATT SGIRATLTPT VLAPRLPQPP QNPTNIQNFQ 450
LPPGMVLVRS ENGQLLMIPQ QALAQMQAQA HAQPQTTMAP RPATPTSAPP 500
VQISTVQAPG TPIIARQVTP TTIIKQVSQA QTTVQPSATL QRSPGVQPQL 550
VLGGAAQTAS LGTATAVQTG TPQRTVPGAT TTSSAATETM ENVKKCKNFL 600
STLIKLASSG KQSTETAANV KELVQNLLDG KIEAEDFTSR LYRELNSSPQ 650
PYLVPFLKRS LPALRQLTPD SAAFIQQSQQ QPPPPTSQAT TALTAVVLSS 700
SVQRTAGKTA ATVTSALQPP VLSLTQPTQV GVGKQGQPTP LVIQQPPKPG 750
ALIRPPQVTL TQTPMVALRQ PHNRIMLTTP QQIQLNPLQP VPVVKPAVLP 800
GTKALSAVSA QAAAAQKNKL KEPGGGSFRD DDDINDVASM AGVNLSEESA 850
RILATNSELV GTLTRSCKDE TFLLQAPLQR RILEIGKKHG ITELHPDVVS 900
YVSHATQQRL QNLVEKISET AQQKNFSYKD DDRYEQASDV RAQLKFFEQL 950
DQIEKQRKDE QEREILMRAA KSRSRQEDPE QLRLKQKAKE MQQQELAQMR 1000
QRDANLTALA AIGPRKKRKV DCPGPGSGAE GSGPGSVVPG SSGVGTPRQF 1050
TRQRITRVNL RDLIFCLENE RETSHSLLLY KAFLK 1085
Length:1,085
Mass (Da):110,114
Last modified:December 7, 2004 - v2
Checksum:iBC2F5B5F143DB145
GO

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti651 – 6511P → L.
Corresponds to variant rs6089604 [ dbSNP | Ensembl ].
VAR_052258

Sequence conflict

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti105 – 11713PGPPS…PLVPA → GRGLLQQRGGRES in AAC50901. 1 PublicationAdd
BLAST
Sequence conflicti136 – 1361S → A in CAA72189. 1 Publication
Sequence conflicti136 – 1361S → A in AAC50901. 1 Publication
Sequence conflicti186 – 1872Missing in CAA72189. 1 Publication
Sequence conflicti186 – 1872Missing in AAC50901. 1 Publication
Sequence conflicti235 – 26632Missing in AAC50901. 1 PublicationAdd
BLAST
Sequence conflicti295 – 2951P → L in AAC50901. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
Y11354 mRNA. Translation: CAA72189.1.
AY623115 Genomic DNA. Translation: AAT38111.1.
AL109911, AL137077 Genomic DNA. Translation: CAI19182.1.
AL137077, AL109911 Genomic DNA. Translation: CAI11045.1.
CH471077 Genomic DNA. Translation: EAW75407.1.
U75308 mRNA. Translation: AAC50901.1.
CCDSiCCDS33500.1.
RefSeqiNP_003176.2. NM_003185.3.
UniGeneiHs.18857.

Genome annotation databases

EnsembliENST00000252996; ENSP00000252996; ENSG00000130699.
GeneIDi6874.
KEGGihsa:6874.
UCSCiuc002ybs.3. human.

Keywords - Coding sequence diversityi

Polymorphism

Cross-referencesi

Web resourcesi

NIEHS-SNPs

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
Y11354 mRNA. Translation: CAA72189.1 .
AY623115 Genomic DNA. Translation: AAT38111.1 .
AL109911 , AL137077 Genomic DNA. Translation: CAI19182.1 .
AL137077 , AL109911 Genomic DNA. Translation: CAI11045.1 .
CH471077 Genomic DNA. Translation: EAW75407.1 .
U75308 mRNA. Translation: AAC50901.1 .
CCDSi CCDS33500.1.
RefSeqi NP_003176.2. NM_003185.3.
UniGenei Hs.18857.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1H3O X-ray 2.30 A/C 872-945 [» ]
2P6V X-ray 2.00 A 575-679 [» ]
ProteinModelPortali O00268.
SMRi O00268. Positions 583-679, 872-919.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 112737. 36 interactions.
DIPi DIP-35350N.
IntActi O00268. 8 interactions.
MINTi MINT-236922.
STRINGi 9606.ENSP00000252996.

PTM databases

PhosphoSitei O00268.

Proteomic databases

MaxQBi O00268.
PaxDbi O00268.
PRIDEi O00268.

Protocols and materials databases

DNASUi 6874.
Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENST00000252996 ; ENSP00000252996 ; ENSG00000130699 .
GeneIDi 6874.
KEGGi hsa:6874.
UCSCi uc002ybs.3. human.

Organism-specific databases

CTDi 6874.
GeneCardsi GC20M060529.
H-InvDB HIX0015971.
HIX0174705.
HGNCi HGNC:11537. TAF4.
HPAi CAB031484.
HPA008599.
MIMi 601796. gene.
neXtProti NX_O00268.
PharmGKBi PA36312.
GenAtlasi Search...

Phylogenomic databases

eggNOGi NOG237595.
HOGENOMi HOG000154502.
HOVERGENi HBG058585.
InParanoidi O00268.
KOi K03129.
OMAi VVMNSHH.
PhylomeDBi O00268.
TreeFami TF316520.

Enzyme and pathway databases

Reactomei REACT_1655. RNA Polymerase II Transcription Pre-Initiation And Promoter Opening.
REACT_1851. RNA Polymerase II Transcription Initiation.
REACT_2089. RNA Polymerase II Promoter Escape.
REACT_22107. RNA Polymerase II Pre-transcription Events.
REACT_6233. Transcription of the HIV genome.
REACT_6253. RNA Polymerase II HIV Promoter Escape.
REACT_6332. HIV Transcription Initiation.
REACT_834. RNA Polymerase II Transcription Initiation And Promoter Clearance.

Miscellaneous databases

ChiTaRSi TAF4. human.
EvolutionaryTracei O00268.
GeneWikii TAF4.
GenomeRNAii 6874.
NextBioi 26837.
PROi O00268.
SOURCEi Search...

Gene expression databases

ArrayExpressi O00268.
Bgeei O00268.
CleanExi HS_TAF4.
Genevestigatori O00268.

Family and domain databases

Gene3Di 1.10.20.10. 1 hit.
InterProi IPR009072. Histone-fold.
IPR007900. TAF4.
IPR003894. TAFH_NHR1.
[Graphical view ]
Pfami PF05236. TAF4. 1 hit.
PF07531. TAFH. 1 hit.
[Graphical view ]
SMARTi SM00549. TAFH. 1 hit.
[Graphical view ]
SUPFAMi SSF47113. SSF47113. 1 hit.
PROSITEi PS51119. TAFH. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Human TAF(II)135 potentiates transcriptional activation by the AF-2s of the retinoic acid, vitamin D3, and thyroid hormone receptors in mammalian cells."
    Mengus G., May M., Carre L., Chambon P., Davidson I.
    Genes Dev. 11:1381-1395(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
  2. NIEHS SNPs program
    Submitted (MAY-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  3. "The DNA sequence and comparative analysis of human chromosome 20."
    Deloukas P., Matthews L.H., Ashurst J.L., Burton J., Gilbert J.G.R., Jones M., Stavrides G., Almeida J.P., Babbage A.K., Bagguley C.L., Bailey J., Barlow K.F., Bates K.N., Beard L.M., Beare D.M., Beasley O.P., Bird C.P., Blakey S.E.
    , Bridgeman A.M., Brown A.J., Buck D., Burrill W.D., Butler A.P., Carder C., Carter N.P., Chapman J.C., Clamp M., Clark G., Clark L.N., Clark S.Y., Clee C.M., Clegg S., Cobley V.E., Collier R.E., Connor R.E., Corby N.R., Coulson A., Coville G.J., Deadman R., Dhami P.D., Dunn M., Ellington A.G., Frankland J.A., Fraser A., French L., Garner P., Grafham D.V., Griffiths C., Griffiths M.N.D., Gwilliam R., Hall R.E., Hammond S., Harley J.L., Heath P.D., Ho S., Holden J.L., Howden P.J., Huckle E., Hunt A.R., Hunt S.E., Jekosch K., Johnson C.M., Johnson D., Kay M.P., Kimberley A.M., King A., Knights A., Laird G.K., Lawlor S., Lehvaeslaiho M.H., Leversha M.A., Lloyd C., Lloyd D.M., Lovell J.D., Marsh V.L., Martin S.L., McConnachie L.J., McLay K., McMurray A.A., Milne S.A., Mistry D., Moore M.J.F., Mullikin J.C., Nickerson T., Oliver K., Parker A., Patel R., Pearce T.A.V., Peck A.I., Phillimore B.J.C.T., Prathalingam S.R., Plumb R.W., Ramsay H., Rice C.M., Ross M.T., Scott C.E., Sehra H.K., Shownkeen R., Sims S., Skuce C.D., Smith M.L., Soderlund C., Steward C.A., Sulston J.E., Swann R.M., Sycamore N., Taylor R., Tee L., Thomas D.W., Thorpe A., Tracey A., Tromans A.C., Vaudin M., Wall M., Wallis J.M., Whitehead S.L., Whittaker P., Willey D.L., Williams L., Williams S.A., Wilming L., Wray P.W., Hubbard T., Durbin R.M., Bentley D.R., Beck S., Rogers J.
    Nature 414:865-871(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  4. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  5. "Molecular cloning and analysis of two subunits of the human TFIID complex: hTAFII130 and hTAFII100."
    Tanese N., Saluja D., Vassallo M.F., Chen J.-L., Admon A.
    Proc. Natl. Acad. Sci. U.S.A. 93:13611-13616(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 105-1085, PARTIAL PROTEIN SEQUENCE.
  6. "TAF-like function of SV40 large T antigen."
    Damania B., Alwine J.C.
    Genes Dev. 10:1369-1381(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: INTERACTION WITH SV40 LARGE T ANTIGEN.
  7. "Identification of TATA-binding protein-free TAFII-containing complex subunits suggests a role in nucleosome acetylation and signal transduction."
    Brand M., Yamamoto K., Staub A., Tora L.
    J. Biol. Chem. 274:18285-18289(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION IN THE TFTC-HAT COMPLEX WITH TAF5L; TAF6L; TADA3L; SUPT3H; TAF2; TAF5; TRRAP; GCN5L2 AND TAF10.
  8. "Novel subunits of the TATA binding protein free TAFII-containing transcription complex identified by matrix-assisted laser desorption/ionization-time of flight mass spectrometry following one-dimensional gel electrophoresis."
    Cavusoglu N., Brand M., Tora L., van Dorsselaer A.
    Proteomics 3:217-223(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION IN THE TFTC-HAT COMPLEX, IDENTIFICATION BY MASS SPECTROMETRY.
  9. "Physical association and coordinate function of the H3 K4 methyltransferase MLL1 and the H4 K16 acetyltransferase MOF."
    Dou Y., Milne T.A., Tackett A.J., Smith E.R., Fukuda A., Wysocka J., Allis C.D., Chait B.T., Hess J.L., Roeder R.G.
    Cell 121:873-885(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION IN THE MLL1/MLL COMPLEX.
  10. "A functional interaction between ATF7 and TAF12 that is modulated by TAF4."
    Hamard P.J., Dalbies-Tran R., Hauss C., Davidson I., Kedinger C., Chatton B.
    Oncogene 24:3472-3483(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: INTERACTION WITH ATF7.
  11. "Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions."
    Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K., Rodionov V., Han D.K.
    Sci. Signal. 2:RA46-RA46(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Tissue: Leukemic T-cell.
  12. "The human TFIID components TAF(II)135 and TAF(II)20 and the yeast SAGA components ADA1 and TAF(II)68 heterodimerize to form histone-like pairs."
    Gangloff Y.-G., Werten S., Romier C., Carre L., Poch O., Moras D., Davidson I.
    Mol. Cell. Biol. 20:340-351(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.3 ANGSTROMS) OF 872-920 IN COMPLEX WITH TAF12.

Entry informationi

Entry nameiTAF4_HUMAN
AccessioniPrimary (citable) accession number: O00268
Secondary accession number(s): A6NGD9
, Q5TBP6, Q99721, Q9BR40, Q9BX42
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: December 7, 2004
Last modified: September 3, 2014
This is version 156 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Human chromosome 20
    Human chromosome 20: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  4. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  5. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  6. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi