Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

ATP-dependent DNA ligase clustered with Ku protein

Gene

ligD

Organism
Streptomyces sp. PAMC26508
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligase clustered with Ku proteinImported (EC:6.5.1.1Imported)
Gene namesi
Name:ligDImported
ORF Names:F750_4841Imported
OrganismiStreptomyces sp. PAMC26508Imported
Taxonomic identifieri1265601 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaStreptomycetalesStreptomycetaceaeStreptomyces
ProteomesiUP000012995 Componenti: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

InterProiIPR014145. LigD_pol_dom.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.

Sequencei

Sequence statusi: Complete.

M9U2I4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTPITEVEGR RLTLSNLDKV LYPATGTTKG EVLHYYAATA ARVMLPHLRD
60 70 80 90 100
RPLSFLRYPD GPEGLRFFTK NPPPGTPDWV RTAPVPRSDD PGARQVLAQD
110 120 130 140 150
LPSLMWAANL VVEFHTHQWR QDSPAVADRM VFDLDPGPPA GVVECCAVAL
160 170 180 190 200
WLRERLAGDG LSAYGKTSGS KGLHLLVPLE PTPSGKVTAY AKKLAVEAQG
210 220 230 240 250
ALPELAVHRM TRALRPGKVF VDFSQNAAAK TTAAPYTLRA KARPTVSAPV
260 270 280 290
TWEEIEECGA PDDLVLLAGD MAARLERHGD LLAPLNDPGQ AGALPGG
Length:297
Mass (Da):31,959
Last modified:June 26, 2013 - v1
Checksum:iD60EA81190E289AD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003990 Genomic DNA. Translation: AGJ57280.1.
RefSeqiWP_015578729.1. NC_021055.1.

Genome annotation databases

EnsemblBacteriaiAGJ57280; AGJ57280; F750_4841.
KEGGistrp:F750_4841.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003990 Genomic DNA. Translation: AGJ57280.1.
RefSeqiWP_015578729.1. NC_021055.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAGJ57280; AGJ57280; F750_4841.
KEGGistrp:F750_4841.

Phylogenomic databases

KOiK01971.

Family and domain databases

InterProiIPR014145. LigD_pol_dom.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of Streptomyces sp. PAMC26508, isolated from Antarctic lichen Cladonia borealis."
    Shin S.C., Park H.
    Submitted (DEC-2012) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: PAMC26508Imported.

Entry informationi

Entry nameiM9U2I4_9ACTN
AccessioniPrimary (citable) accession number: M9U2I4
Entry historyi
Integrated into UniProtKB/TrEMBL: June 26, 2013
Last sequence update: June 26, 2013
Last modified: July 22, 2015
This is version 17 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.