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M5B7B2

- M5B7B2_9MICO

UniProt

M5B7B2 - M5B7B2_9MICO

Protein

Xylose isomerase

Gene

xylA

Organism
Clavibacter michiganensis subsp. nebraskensis NCPPB 2581
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 12 (01 Oct 2014)
      Sequence version 1 (29 May 2013)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    D-xylopyranose = D-xylulose.UniRule annotationSAAS annotation

    Cofactori

    Binds 2 magnesium ions per subunit.UniRule annotation

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Active sitei54 – 541UniRule annotation
    Active sitei57 – 571UniRule annotation
    Metal bindingi181 – 1811Magnesium 1UniRule annotation
    Metal bindingi217 – 2171Magnesium 1UniRule annotation
    Metal bindingi217 – 2171Magnesium 2UniRule annotation
    Metal bindingi220 – 2201Magnesium 2UniRule annotation
    Metal bindingi245 – 2451Magnesium 1UniRule annotation
    Metal bindingi255 – 2551Magnesium 2UniRule annotation
    Metal bindingi257 – 2571Magnesium 2UniRule annotation
    Metal bindingi293 – 2931Magnesium 1UniRule annotation

    GO - Molecular functioni

    1. magnesium ion binding Source: UniProtKB-HAMAP
    2. xylose isomerase activity Source: UniProtKB-HAMAP

    GO - Biological processi

    1. D-xylose metabolic process Source: UniProtKB-HAMAP
    2. pentose-phosphate shunt Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    IsomeraseUniRule annotationSAAS annotationImported

    Keywords - Biological processi

    Carbohydrate metabolism, Pentose shuntUniRule annotationSAAS annotation, Xylose metabolismUniRule annotationSAAS annotation

    Keywords - Ligandi

    MagnesiumUniRule annotation, Metal-bindingUniRule annotationSAAS annotation

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Xylose isomeraseUniRule annotation (EC:5.3.1.5UniRule annotation)
    Gene namesi
    Name:xylAUniRule annotationImported
    ORF Names:CMN_00844Imported
    OrganismiClavibacter michiganensis subsp. nebraskensis NCPPB 2581Imported
    Taxonomic identifieri1097677 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesMicrococcineaeMicrobacteriaceaeClavibacter
    ProteomesiUP000012170: Chromosome

    Subcellular locationi

    Cytoplasm UniRule annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    CytoplasmUniRule annotation

    Interactioni

    Subunit structurei

    Homotetramer.UniRule annotation

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the xylose isomerase family.UniRule annotation

    Phylogenomic databases

    KOiK01805.

    Family and domain databases

    Gene3Di3.20.20.150. 1 hit.
    HAMAPiMF_00455. Xylose_isom_A.
    InterProiIPR013022. Xyl_isomerase-like_TIM-brl.
    IPR013453. XylA_actinobac.
    IPR001998. Xylose_isomerase.
    [Graphical view]
    PfamiPF01261. AP_endonuc_2. 1 hit.
    [Graphical view]
    PRINTSiPR00688. XYLOSISMRASE.
    SUPFAMiSSF51658. SSF51658. 1 hit.
    TIGRFAMsiTIGR02631. xylA_Arthro. 1 hit.
    PROSITEiPS51415. XYLOSE_ISOMERASE. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    M5B7B2-1 [UniParc]FASTAAdd to Basket

    « Hide

    MALTPTREDK FSFGLWTIGY TGADPFGGPT RSDLDVVEGV ERISELGAYG    50
    LTFHDDDLFA FGSTDAERQT QIDRLKGALS DTGIVVPMVT TNLFSAPVFK 100
    DGGFTSNDRA VRRFAIHKVL RNIDLAAELG AQTFVMWGGR EGAEYDSAKD 150
    VRGALERYRE AVNLLGDYVT DKGYDIRFAI EPKPNEPRGD ILLPTLGHAL 200
    AFIETLERPE LVGVNPEVGH EQMAGLNFTA GIMQALYQGK LFHIDLNGQR 250
    GIKYDQDLVF GHGDLQNAFS LVDLLENGGV GGGRSYDGPR HFDYKPSRTE 300
    DITGVWDSAA ANMRMYLLLK ERAQAFRADP EVQEALAAAK VQDIYTPTLD 350
    EGESYDDILA DRSSYEDFAA DEYFDAKGFG FVRLNQLALE HLMGARS 397
    Length:397
    Mass (Da):43,821
    Last modified:May 29, 2013 - v1
    Checksum:iB5A72A571A9E3A16
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    HE614873 Genomic DNA. Translation: CCE74800.1.
    RefSeqiWP_015489588.1. NC_020891.1.
    YP_007685144.1. NC_020891.1.

    Genome annotation databases

    EnsemblBacteriaiCCE74800; CCE74800; CMN_00844.
    GeneIDi15074664.
    KEGGicmc:CMN_00844.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    HE614873 Genomic DNA. Translation: CCE74800.1 .
    RefSeqi WP_015489588.1. NC_020891.1.
    YP_007685144.1. NC_020891.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai CCE74800 ; CCE74800 ; CMN_00844 .
    GeneIDi 15074664.
    KEGGi cmc:CMN_00844.

    Phylogenomic databases

    KOi K01805.

    Family and domain databases

    Gene3Di 3.20.20.150. 1 hit.
    HAMAPi MF_00455. Xylose_isom_A.
    InterProi IPR013022. Xyl_isomerase-like_TIM-brl.
    IPR013453. XylA_actinobac.
    IPR001998. Xylose_isomerase.
    [Graphical view ]
    Pfami PF01261. AP_endonuc_2. 1 hit.
    [Graphical view ]
    PRINTSi PR00688. XYLOSISMRASE.
    SUPFAMi SSF51658. SSF51658. 1 hit.
    TIGRFAMsi TIGR02631. xylA_Arthro. 1 hit.
    PROSITEi PS51415. XYLOSE_ISOMERASE. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Gartemann K.
      Submitted (NOV-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: Type strain: NCPPB 2581Imported.
    2. "The genome sequence of the maize-pathogen Clavibacter michiganensis subsp. nebraskensis."
      Gartemann K.H., Blom J., Dreiseikelmann B., Fluegel M., Jaenicke S., Linke B., Sczcepanowski R., Wittmann J., Goesmann A., Puehler A., Eichenlaub R., Rueckert C.
      Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: Type strain: NCPPB 2581Imported.

    Entry informationi

    Entry nameiM5B7B2_9MICO
    AccessioniPrimary (citable) accession number: M5B7B2
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 29, 2013
    Last sequence update: May 29, 2013
    Last modified: October 1, 2014
    This is version 12 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3