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M5B7B2

- M5B7B2_9MICO

UniProt

M5B7B2 - M5B7B2_9MICO

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Protein

Xylose isomerase

Gene

xylA

Organism
Clavibacter michiganensis subsp. nebraskensis NCPPB 2581
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Catalytic activityi

D-xylopyranose = D-xylulose.UniRule annotationSAAS annotation

Cofactori

Note: Binds 2 magnesium ions per subunit.UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei54 – 541UniRule annotation
Active sitei57 – 571UniRule annotation
Metal bindingi181 – 1811Magnesium 1UniRule annotation
Metal bindingi217 – 2171Magnesium 1UniRule annotation
Metal bindingi217 – 2171Magnesium 2UniRule annotation
Metal bindingi220 – 2201Magnesium 2UniRule annotation
Metal bindingi245 – 2451Magnesium 1UniRule annotation
Metal bindingi255 – 2551Magnesium 2UniRule annotation
Metal bindingi257 – 2571Magnesium 2UniRule annotation
Metal bindingi293 – 2931Magnesium 1UniRule annotation

GO - Molecular functioni

  1. magnesium ion binding Source: UniProtKB-HAMAP
  2. xylose isomerase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. D-xylose metabolic process Source: UniProtKB-HAMAP
  2. pentose-phosphate shunt Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

IsomeraseUniRule annotation

Keywords - Biological processi

Carbohydrate metabolism, Pentose shuntUniRule annotation, Xylose metabolismUniRule annotation

Keywords - Ligandi

MagnesiumUniRule annotation, Metal-bindingUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Xylose isomeraseUniRule annotation (EC:5.3.1.5UniRule annotation)
Gene namesi
Name:xylAUniRule annotationImported
ORF Names:CMN_00844Imported
OrganismiClavibacter michiganensis subsp. nebraskensis NCPPB 2581Imported
Taxonomic identifieri1097677 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesMicrococcineaeMicrobacteriaceaeClavibacter
ProteomesiUP000012170: Chromosome

Subcellular locationi

Cytoplasm UniRule annotation

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

CytoplasmUniRule annotation

Interactioni

Subunit structurei

Homotetramer.UniRule annotation

Family & Domainsi

Sequence similaritiesi

Belongs to the xylose isomerase family.UniRule annotation

Phylogenomic databases

KOiK01805.

Family and domain databases

Gene3Di3.20.20.150. 1 hit.
HAMAPiMF_00455. Xylose_isom_A.
InterProiIPR013022. Xyl_isomerase-like_TIM-brl.
IPR013453. XylA_actinobac.
IPR001998. Xylose_isomerase.
[Graphical view]
PfamiPF01261. AP_endonuc_2. 1 hit.
[Graphical view]
PRINTSiPR00688. XYLOSISMRASE.
SUPFAMiSSF51658. SSF51658. 1 hit.
TIGRFAMsiTIGR02631. xylA_Arthro. 1 hit.
PROSITEiPS51415. XYLOSE_ISOMERASE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

M5B7B2-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MALTPTREDK FSFGLWTIGY TGADPFGGPT RSDLDVVEGV ERISELGAYG
60 70 80 90 100
LTFHDDDLFA FGSTDAERQT QIDRLKGALS DTGIVVPMVT TNLFSAPVFK
110 120 130 140 150
DGGFTSNDRA VRRFAIHKVL RNIDLAAELG AQTFVMWGGR EGAEYDSAKD
160 170 180 190 200
VRGALERYRE AVNLLGDYVT DKGYDIRFAI EPKPNEPRGD ILLPTLGHAL
210 220 230 240 250
AFIETLERPE LVGVNPEVGH EQMAGLNFTA GIMQALYQGK LFHIDLNGQR
260 270 280 290 300
GIKYDQDLVF GHGDLQNAFS LVDLLENGGV GGGRSYDGPR HFDYKPSRTE
310 320 330 340 350
DITGVWDSAA ANMRMYLLLK ERAQAFRADP EVQEALAAAK VQDIYTPTLD
360 370 380 390
EGESYDDILA DRSSYEDFAA DEYFDAKGFG FVRLNQLALE HLMGARS
Length:397
Mass (Da):43,821
Last modified:May 29, 2013 - v1
Checksum:iB5A72A571A9E3A16
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
HE614873 Genomic DNA. Translation: CCE74800.1.
RefSeqiYP_007685144.1. NC_020891.1.

Genome annotation databases

EnsemblBacteriaiCCE74800; CCE74800; CMN_00844.
GeneIDi15074664.
KEGGicmc:CMN_00844.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
HE614873 Genomic DNA. Translation: CCE74800.1 .
RefSeqi YP_007685144.1. NC_020891.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CCE74800 ; CCE74800 ; CMN_00844 .
GeneIDi 15074664.
KEGGi cmc:CMN_00844.

Phylogenomic databases

KOi K01805.

Family and domain databases

Gene3Di 3.20.20.150. 1 hit.
HAMAPi MF_00455. Xylose_isom_A.
InterProi IPR013022. Xyl_isomerase-like_TIM-brl.
IPR013453. XylA_actinobac.
IPR001998. Xylose_isomerase.
[Graphical view ]
Pfami PF01261. AP_endonuc_2. 1 hit.
[Graphical view ]
PRINTSi PR00688. XYLOSISMRASE.
SUPFAMi SSF51658. SSF51658. 1 hit.
TIGRFAMsi TIGR02631. xylA_Arthro. 1 hit.
PROSITEi PS51415. XYLOSE_ISOMERASE. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Gartemann K.
    Submitted (NOV-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: Type strain: NCPPB 2581Imported.
  2. "The genome sequence of the maize-pathogen Clavibacter michiganensis subsp. nebraskensis."
    Gartemann K.H., Blom J., Dreiseikelmann B., Fluegel M., Jaenicke S., Linke B., Sczcepanowski R., Wittmann J., Goesmann A., Puehler A., Eichenlaub R., Rueckert C.
    Submitted (APR-2013) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: Type strain: NCPPB 2581Imported.

Entry informationi

Entry nameiM5B7B2_9MICO
AccessioniPrimary (citable) accession number: M5B7B2
Entry historyi
Integrated into UniProtKB/TrEMBL: May 29, 2013
Last sequence update: May 29, 2013
Last modified: November 26, 2014
This is version 14 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3