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Protein

Xylose isomerase

Gene

YM304_31700

Organism
Ilumatobacter coccineus YM16-304
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

D-xylopyranose = D-xylulose.UniRule annotationSAAS annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

IsomeraseUniRule annotationSAAS annotation

Keywords - Biological processi

Carbohydrate metabolism, Pentose shuntUniRule annotationSAAS annotation, Xylose metabolismUniRule annotationSAAS annotation

Keywords - Ligandi

Metal-bindingUniRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Xylose isomeraseUniRule annotationSAAS annotation (EC:5.3.1.5UniRule annotationSAAS annotation)
Gene namesi
ORF Names:YM304_31700Imported
OrganismiIlumatobacter coccineus YM16-304Imported
Taxonomic identifieri1313172 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaAcidimicrobiiaAcidimicrobialesAcidimicrobiaceaeIlumatobacter
ProteomesiUP000011863 Componenti: Chromosome

Subcellular locationi

  • Cytoplasm UniRule annotation

GO - Cellular componenti

Complete GO annotation...

Interactioni

Subunit structurei

Homotetramer.UniRule annotation

Family & Domainsi

Sequence similaritiesi

Belongs to the xylose isomerase family.UniRule annotation

Phylogenomic databases

KOiK01805.

Family and domain databases

Gene3Di3.20.20.150. 1 hit.
InterProiIPR013022. Xyl_isomerase-like_TIM-brl.
IPR001998. Xylose_isomerase.
[Graphical view]
PfamiPF01261. AP_endonuc_2. 1 hit.
[Graphical view]
PRINTSiPR00688. XYLOSISMRASE.
SUPFAMiSSF51658. SSF51658. 1 hit.
PROSITEiPS51415. XYLOSE_ISOMERASE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

M5A4W9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASTQRFGAG IWHFATYVDR YATDGYGEPR SVIDAIDLAG QVRDLSVVDL
60 70 80 90 100
NYPFFGGDFT NEQVKTALDR NGLGVIGITP EIYTRVFAKG AFTNPDHGVR
110 120 130 140 150
RLAHDLVTEA CDVVRSFGAD YVKLWPGQDG WDYPFQVDYG ELWQASMDGV
160 170 180 190 200
GQLADENPDL RFVVEYKPRE PRVHMSYSSV ARTLLGIEKI GLPNIGILLD
210 220 230 240 250
FGHALFGGEA PSDSAQLAID YGRLFGMDVN DNLRGWDDDM VAGTVHPIEL
260 270 280 290 300
LEFFYTLRKN NWEGVWQLDQ FPFREDSVEA ADAAIDFLKA CDRALDKMDM
310 320
DAMREAQARH DAMGALRIAQ QALFSSY
Length:327
Mass (Da):36,589
Last modified:May 29, 2013 - v1
Checksum:iC3458AB63E624A14
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP012057 Genomic DNA. Translation: BAN03484.1.
RefSeqiWP_015442731.1. NC_020520.1.

Genome annotation databases

EnsemblBacteriaiBAN03484; BAN03484; YM304_31700.
KEGGiaym:YM304_31700.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP012057 Genomic DNA. Translation: BAN03484.1.
RefSeqiWP_015442731.1. NC_020520.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAN03484; BAN03484; YM304_31700.
KEGGiaym:YM304_31700.

Phylogenomic databases

KOiK01805.

Family and domain databases

Gene3Di3.20.20.150. 1 hit.
InterProiIPR013022. Xyl_isomerase-like_TIM-brl.
IPR001998. Xylose_isomerase.
[Graphical view]
PfamiPF01261. AP_endonuc_2. 1 hit.
[Graphical view]
PRINTSiPR00688. XYLOSISMRASE.
SUPFAMiSSF51658. SSF51658. 1 hit.
PROSITEiPS51415. XYLOSE_ISOMERASE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Ilumatobacter nonamiense sp. nov. and Ilumatobacter coccineum sp. nov., isolated from seashore sand."
    Matsumoto A., Kasai H., Matsuo Y., Shizuri Y., Ichikawa N., Fujita N., Omura S., Takahashi Y.
    Int. J. Syst. Evol. Microbiol. 63:3404-3408(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: YM16-304Imported.

Entry informationi

Entry nameiM5A4W9_9ACTN
AccessioniPrimary (citable) accession number: M5A4W9
Entry historyi
Integrated into UniProtKB/TrEMBL: May 29, 2013
Last sequence update: May 29, 2013
Last modified: July 22, 2015
This is version 19 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.