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Protein

Phosphoenolpyruvate carboxylase

Gene

ppc

Organism
Bradyrhizobium oligotrophicum S58
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle.UniRule annotationSAAS annotation

Catalytic activityi

Phosphate + oxaloacetate = H2O + phosphoenolpyruvate + HCO3-.UniRule annotationSAAS annotation

Cofactori

Mg2+UniRule annotationSAAS annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei161 – 1611UniRule annotation
Active sitei590 – 5901UniRule annotation

GO - Molecular functioni

  1. magnesium ion binding Source: UniProtKB-HAMAP
  2. phosphoenolpyruvate carboxylase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. carbon fixation Source: UniProtKB-HAMAP
  2. oxaloacetate metabolic process Source: UniProtKB-HAMAP
  3. tricarboxylic acid cycle Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LyaseUniRule annotationSAAS annotation

Keywords - Biological processi

Carbon dioxide fixationUniRule annotationSAAS annotation

Keywords - Ligandi

MagnesiumUniRule annotationSAAS annotation, PyruvateImported

Names & Taxonomyi

Protein namesi
Recommended name:
Phosphoenolpyruvate carboxylaseUniRule annotationSAAS annotation (EC:4.1.1.31UniRule annotationSAAS annotation)
Short name:
PEPCUniRule annotation
Short name:
PEPCaseUniRule annotation
Gene namesi
Name:ppcUniRule annotation
ORF Names:S58_50320Imported
OrganismiBradyrhizobium oligotrophicum S58Imported
Taxonomic identifieri1245469 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeBradyrhizobium
ProteomesiUP000011841 Componenti: Chromosome

Interactioni

Subunit structurei

Homotetramer.UniRule annotation

Family & Domainsi

Sequence similaritiesi

Belongs to the PEPCase type 1 family.UniRule annotation

Phylogenomic databases

KOiK01595.

Family and domain databases

HAMAPiMF_00595. PEPcase_type1.
InterProiIPR021135. PEP_COase.
IPR018129. PEP_COase_AS.
IPR022805. PEP_COase_bac/pln-type.
IPR015813. Pyrv/PenolPyrv_Kinase-like_dom.
[Graphical view]
PfamiPF00311. PEPcase. 1 hit.
[Graphical view]
PRINTSiPR00150. PEPCARBXLASE.
SUPFAMiSSF51621. SSF51621. 1 hit.
PROSITEiPS00781. PEPCASE_1. 1 hit.
PS00393. PEPCASE_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

M4ZC32-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSPQIMPSED TRPNRAAEAQ AMEEDARLRD DIRLLGRILG DTVRDQEGAD
60 70 80 90 100
VFDLVERIRQ TSVRFHRDED RQARHELEHI LDGMTTAETV RIVRAFSYFS
110 120 130 140 150
HLANIAEDQN NIRRMRAKSD ANGGAGMLAS TLAHAKSAGF EAADLRKFFS
160 170 180 190 200
TALVSPVLTA HPTEVRRKST MDREMEVAML LDRRERMQLT PDEREANDEA
210 220 230 240 250
LRRAVLTLWQ TNLLRRTKLT VLDEVTNGLS FYDYTFLREV PRLLCALEDR
260 270 280 290 300
LNDGAEVAGD LASFLRMGSW IGGDRDGNPF VTAEVMRGTL KLQSSLALHY
310 320 330 340 350
YLEELHLLGG ELSMAAHLAD VSEELRALAE RSPDTSPHRI GEPYRLAVSG
360 370 380 390 400
IYARLAATAK KLGIQISRLP VGAVAPYDSV KEFQDDLDVL HRSLIANNAE
410 420 430 440 450
VIARGRLRLL RRAIDCFGFH LARLDIRQNS AVHERTVAEL IDTAMPGMSY
460 470 480 490 500
LALSEDARVG LLVSELRNTR PLVSQFIKYS DETVGELALF RAAADAHATF
510 520 530 540 550
GADVISQCII SMCKGMSDML EVALLLKEVG LIDPSGRCGV NIVPLFETIE
560 570 580 590 600
DLQASSGIMD RMLALHDYRR LVDSRGAVQE VMLGYSDSNK DGGFVTSGWE
610 620 630 640 650
LYKAEIGLVD IFERHGVRLR LFHGRGGSVG RGGGPSYDAI IAQPGGAVNG
660 670 680 690 700
QIRITEQGEI ISSKYSNAEV GRNNLDILAA ATLEASLLHP RQPAPKREYL
710 720 730 740 750
TAMDRLSELA FKAYRGLVYE TDGFVEYFWS STVINEIATL NIGSRPASRK
760 770 780 790 800
KTRAIEDLRA IPWVFSWAQC RLMLPGWYGF GSAVESWIAE NPEQGMPFLR
810 820 830 840 850
ELYREWPFFR MLLSNMDMVL AKSSIAIASR YAELVPDEAL REKIFGRIRR
860 870 880 890 900
EWNLVIETLL DIMGQERLLQ GNPLLERSVR NRFPYLDPLN HVQVELLKEH
910 920
RAQNPDEQVL RGIQLTINGI SAGLRNTG
Length:928
Mass (Da):103,919
Last modified:May 29, 2013 - v1
Checksum:iEDA06FBF55F344A2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP012603 Genomic DNA. Translation: BAM91011.1.
RefSeqiWP_015668100.1. NC_020453.1.
YP_007514598.1. NC_020453.1.

Genome annotation databases

EnsemblBacteriaiBAM91011; BAM91011; S58_50320.
GeneIDi14685739.
KEGGiaol:S58_50320.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP012603 Genomic DNA. Translation: BAM91011.1.
RefSeqiWP_015668100.1. NC_020453.1.
YP_007514598.1. NC_020453.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAM91011; BAM91011; S58_50320.
GeneIDi14685739.
KEGGiaol:S58_50320.

Phylogenomic databases

KOiK01595.

Family and domain databases

HAMAPiMF_00595. PEPcase_type1.
InterProiIPR021135. PEP_COase.
IPR018129. PEP_COase_AS.
IPR022805. PEP_COase_bac/pln-type.
IPR015813. Pyrv/PenolPyrv_Kinase-like_dom.
[Graphical view]
PfamiPF00311. PEPcase. 1 hit.
[Graphical view]
PRINTSiPR00150. PEPCARBXLASE.
SUPFAMiSSF51621. SSF51621. 1 hit.
PROSITEiPS00781. PEPCASE_1. 1 hit.
PS00393. PEPCASE_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome Analysis Suggests that the Soil Oligotrophic Bacterium Agromonas oligotrophica (Bradyrhizobium oligotrophicum) Is a Nitrogen-Fixing Symbiont of Aeschynomene indica."
    Okubo T., Fukushima S., Itakura M., Oshima K., Longtonglang A., Teaumroong N., Mitsui H., Hattori M., Hattori R., Hattori T., Minamisawa K.
    Appl. Environ. Microbiol. 79:2542-2551(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: S58Imported.

Entry informationi

Entry nameiM4ZC32_9BRAD
AccessioniPrimary (citable) accession number: M4ZC32
Entry historyi
Integrated into UniProtKB/TrEMBL: May 29, 2013
Last sequence update: May 29, 2013
Last modified: April 1, 2015
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.