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Protein
Submitted name:

Alpha-amylase

Gene

WQG_5280

Organism
Bibersteinia trehalosi USDA-ARS-USMARC-192
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. alpha-amylase activity Source: InterPro
  2. calcium ion binding Source: InterPro

GO - Biological processi

  1. alpha-glucan catabolic process Source: InterPro
  2. cellular oligosaccharide catabolic process Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Alpha-amylaseImported
Gene namesi
ORF Names:WQG_5280Imported
OrganismiBibersteinia trehalosi USDA-ARS-USMARC-192Imported
Taxonomic identifieri1171377 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPasteurellalesPasteurellaceaeBibersteinia
ProteomesiUP000011846 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. periplasmic space Source: InterPro
Complete GO annotation...

Family & Domainsi

Phylogenomic databases

KOiK01176.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR014635. A_amylase_MalS.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PIRSFiPIRSF036917. Alph_amls_MalS. 1 hit.
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 2 hits.

Sequencei

Sequence statusi: Complete.

M4R6Q4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIPQRAHLGD FVKFYLKLTA CKFVFGQFNA LNIAMNKSFL CLCLFGVSNL
60 70 80 90 100
FAQSWQHAHF GTFNDDAERH LFQSSAMLTK GNYPLNFLFG EQCYQPQAAM
110 120 130 140 150
KLNQSMPLVP CTADIPSIRL FRQGNYRAQI DMHNSIPTLK IHLEQLPEKT
160 170 180 190 200
NAELPCPRWN HTPLEIDVSA TFSEGDIVRD FYSGQHAVVK NGKITLMPAE
210 220 230 240 250
NADGLLLLEK LENHQQTVFD WKNATVYFVL TDRFYNGDPS NDHSYGRRSD
260 270 280 290 300
GMQEIGTFHG GDLRGLTEKL DYLQQLGVNV LWISSPLEQI HGWVGGGNKG
310 320 330 340 350
DFPHYAYHGY YHLDWTKIDA NMGSEADLKN LVQQAHQRGI RILFDVVMNH
360 370 380 390 400
TGYATLADMQ EFNFGRFYLK SEEISSVLGK NWTDWQPKQG QNWHSFNDFI
410 420 430 440 450
HFSDEKAWEN WWGRAWVRAD IGDYDSPKFD DLKMSLSALP DLKTESEQAV
460 470 480 490 500
QLPQFFANKG TNAQTLENGK VRDYLISWLS YWVRQYGIDG FRVDTAKHVE
510 520 530 540 550
KSTWLELKQA SEQALKEWQQ ENPKESFNAP FWMVGEAWGH GVFQSDYYQN
560 570 580 590 600
GFDAMINFDF QDQAKNALAC FADIEPAYRE MNDKLHSFNV LSYLSSHDTR
610 620 630 640 650
LFFHSDSEQN IHKQKVAANL LLLSPGAVQI YYGDESGREF GATGSDPVQG
660 670 680 690 700
TRSDMNWQDL QQDPAKKVLH QHWQKLAQFR QRHPAIGAGK HQLLSTAQYF
710
AFSRILNTDK VMIIWAGH
Length:718
Mass (Da):82,466
Last modified:May 28, 2013 - v1
Checksum:i378F3E8AE6A77F09
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003745 Genomic DNA. Translation: AGH37808.1.
RefSeqiWP_015431947.1. NC_020515.1.
YP_007547599.1. NC_020515.1.

Genome annotation databases

EnsemblBacteriaiAGH37808; AGH37808; WQG_5280.
KEGGibto:WQG_5280.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003745 Genomic DNA. Translation: AGH37808.1.
RefSeqiWP_015431947.1. NC_020515.1.
YP_007547599.1. NC_020515.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAGH37808; AGH37808; WQG_5280.
KEGGibto:WQG_5280.

Phylogenomic databases

KOiK01176.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR014635. A_amylase_MalS.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PIRSFiPIRSF036917. Alph_amls_MalS. 1 hit.
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 2 hits.
ProtoNetiSearch...

Publicationsi

  1. "Annotation of the Bibersteinia trehalsoi USDA-ARS-USMARC-192 complete genome."
    Harhay G.P., Koren S., Phillippy A., McVey D.S., Kuszak J., Clawson M., Harhay D.M., Heaton M., Chitko-Mckown C., Smith T.P.L.
    Submitted (FEB-2013) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: USDA-ARS-USMARC-192Imported.

Entry informationi

Entry nameiM4R6Q4_BIBTR
AccessioniPrimary (citable) accession number: M4R6Q4
Entry historyi
Integrated into UniProtKB/TrEMBL: May 28, 2013
Last sequence update: May 28, 2013
Last modified: March 31, 2015
This is version 13 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.