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Protein
Submitted name:

T, brachyury homolog b

Gene
N/A
Organism
Xiphophorus maculatus (Southern platyfish) (Platypoecilus maculatus)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation
Biological processTranscription, Transcription regulationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
T, brachyury homolog bImported
OrganismiXiphophorus maculatus (Southern platyfish) (Platypoecilus maculatus)Imported
Taxonomic identifieri8083 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiNeoteleosteiAcanthomorphataOvalentariaAtherinomorphaeCyprinodontiformesPoeciliidaePoeciliinaeXiphophorus
Proteomesi
  • UP000002852 Componenti: Unassembled WGS sequence

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotationSAAS annotation

Interactioni

Protein-protein interaction databases

STRINGi8083.ENSXMAP00000011147.

Family & Domainsi

Phylogenomic databases

eggNOGiKOG3585. Eukaryota.
ENOG410XSTS. LUCA.
GeneTreeiENSGT00760000118897.
InParanoidiM4A9K3.
OMAiAPSCVYI.
OrthoDBiEOG091G05OC.

Family and domain databases

CDDicd00182. TBOX. 1 hit.
Gene3Di2.60.40.820. 1 hit.
InterProiView protein in InterPro
IPR008967. p53-like_TF_DNA-bd.
IPR002070. TF_Brachyury.
IPR001699. TF_T-box.
IPR018186. TF_T-box_CS.
PANTHERiPTHR11267. PTHR11267. 1 hit.
PfamiView protein in Pfam
PF00907. T-box. 1 hit.
PRINTSiPR00938. BRACHYURY.
PR00937. TBOX.
SMARTiView protein in SMART
SM00425. TBOX. 1 hit.
SUPFAMiSSF49417. SSF49417. 1 hit.
PROSITEiView protein in PROSITE
PS01283. TBOX_1. 1 hit.
PS01264. TBOX_2. 1 hit.
PS50252. TBOX_3. 1 hit.

Sequencei

Sequence statusi: Complete.

M4A9K3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATRAGECPS KAAQYRVDHL LSAVESELQA GSEKGDPTER DLKVSLDERE
60 70 80 90 100
LWQKFKDLTN EMIVTKNGRR MFPVLKANVS GLDPNAMYSF LLDFVSADNH
110 120 130 140 150
RWKYVNGEWV PGGKPEPQTP SCVYIHPDSP NFGAHWMKAP VSFSKVKLTN
160 170 180 190 200
KLNGGGQIML NSLHKYEPRI HIVRVGGPRR MITSHSFPET QFIAVTAYQN
210 220 230 240 250
EEITALKIKY NPFAKAFLDA KERNDHKDMR EEANENPQSG YSQCSWFIHG
260 270 280 290 300
TGTLCPPTSP HSQFGSPIAL SPSHGCERYS SLRSHRSAPY SSPYAHRSNS
310 320 330 340 350
PTGYSDSSSS CLSMLPSHDN WSSLQMPTHS SMMPMTHNST CAANSSQYTS
360 370 380 390 400
LWSVSNSPLT PVSQNGGLSS CLSSQFLRGS SSHYPSLPHS ATAPTSVSPM
410 420 430
YDSSSATEVQ DPVQYEASPH GRLPSAWTPV TPPSL
Length:435
Mass (Da):47,944
Last modified:May 1, 2013 - v1
Checksum:i9E1ABC1F5D027815
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AGAJ01021553 Genomic DNA. No translation available.

Genome annotation databases

EnsembliENSXMAT00000011161; ENSXMAP00000011147; ENSXMAG00000011123.

Similar proteinsi

Entry informationi

Entry nameiM4A9K3_XIPMA
AccessioniPrimary (citable) accession number: M4A9K3
Entry historyiIntegrated into UniProtKB/TrEMBL: May 1, 2013
Last sequence update: May 1, 2013
Last modified: August 30, 2017
This is version 33 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

Lacks conserved residue(s) required for the propagation of feature annotation.PROSITE-ProRule annotation
The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported