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M1ADS0

- M1ADS0_SOLTU

UniProt

M1ADS0 - M1ADS0_SOLTU

Protein

Alpha-amylase

Gene

PGSC0003DMG400007974

Organism
Solanum tuberosum (Potato)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 9 (01 Oct 2014)
      Sequence version 1 (03 Apr 2013)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units.UniRule annotation

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Active sitei200 – 2001NucleophileUniRule annotation
    Active sitei225 – 2251Proton donorUniRule annotation

    GO - Molecular functioni

    1. alpha-amylase activity Source: UniProtKB-EC
    2. calcium ion binding Source: InterPro

    GO - Biological processi

    1. carbohydrate metabolic process Source: UniProtKB-KW
    2. response to abscisic acid Source: EnsemblPlants/Gramene
    3. response to gibberellin Source: EnsemblPlants/Gramene

    Keywords - Molecular functioni

    GlycosidaseUniRule annotation, Hydrolase

    Keywords - Biological processi

    Carbohydrate metabolismUniRule annotation

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Alpha-amylaseUniRule annotation (EC:3.2.1.1UniRule annotation)
    Gene namesi
    Name:PGSC0003DMG400007974Imported
    OrganismiSolanum tuberosum (Potato)Imported
    Taxonomic identifieri4113 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaeasteridslamiidsSolanalesSolanaceaeSolanoideaeSolaneaeSolanum
    ProteomesiUP000011115: Unplaced

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the glycosyl hydrolase 13 family.UniRule annotation

    Phylogenomic databases

    KOiK01176.

    Family and domain databases

    Gene3Di2.60.40.1180. 1 hit.
    3.20.20.80. 1 hit.
    InterProiIPR012850. A-amylase_bs_C.
    IPR013775. A-amylase_pln.
    IPR006046. Alpha_amylase.
    IPR015902. Glyco_hydro_13.
    IPR013780. Glyco_hydro_13_b.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR006589. Glyco_hydro_13_sub_cat_dom.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view]
    PANTHERiPTHR10357. PTHR10357. 1 hit.
    PfamiPF07821. Alpha-amyl_C2. 1 hit.
    PF00128. Alpha-amylase. 1 hit.
    [Graphical view]
    PIRSFiPIRSF001028. Alph-amls_plant. 1 hit.
    PRINTSiPR00110. ALPHAAMYLASE.
    SMARTiSM00642. Aamy. 1 hit.
    SM00810. Alpha-amyl_C2. 1 hit.
    [Graphical view]
    SUPFAMiSSF51445. SSF51445. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    M1ADS0-1 [UniParc]FASTAAdd to Basket

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    MNSIFPLCLI LSLFLPMFAS STVLFQGFNW ESSNKQGGWY NSLINLVPDL    50
    AKAGVTHVWL PPSSHSVAPQ GYMPGRLYDL DASKFGNQQQ LKTLIKALHD 100
    HGIKSVADIV INHRTADNKD SRGIYSIFEG GTSDDRLDWG PSFICKNDTQ 150
    YSDGTGNPDT GLDFEPAPDI DHLNTRVQKE LSDWMNWLKS EIGFDGWRFD 200
    FVRGYAPCIT KIYMRNTSPD FAVGEFWNSL AYGQDGKPEY NQDNHRNELV 250
    DWVKNAGWAV TAFDFTTKGI LQAAVQGELW RLKDPNGKPP GMIGVLPRKA 300
    VTFIDNHDTG STQNMWPFPS DKVMQGYAYI LTHPGIPSVF YDHFFDWGFK 350
    DGISALISIR KRNRICATSN VQIMASDSDL YIAMIHHKII VKIGPKLDLG 400
    NLIPPNYEVA TSGQDYAVWE QKA 423
    Length:423
    Mass (Da):47,527
    Last modified:April 3, 2013 - v1
    Checksum:i127498E958635A90
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    M81682 Genomic DNA. No translation available.
    RefSeqiXP_006354888.1. XM_006354826.1.

    Genome annotation databases

    EnsemblPlantsiPGSC0003DMT400020591; PGSC0003DMT400020591; PGSC0003DMG400007974.
    GeneIDi102598863.
    KEGGisot:102598863.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    M81682 Genomic DNA. No translation available.
    RefSeqi XP_006354888.1. XM_006354826.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi PGSC0003DMT400020591 ; PGSC0003DMT400020591 ; PGSC0003DMG400007974 .
    GeneIDi 102598863.
    KEGGi sot:102598863.

    Phylogenomic databases

    KOi K01176.

    Family and domain databases

    Gene3Di 2.60.40.1180. 1 hit.
    3.20.20.80. 1 hit.
    InterProi IPR012850. A-amylase_bs_C.
    IPR013775. A-amylase_pln.
    IPR006046. Alpha_amylase.
    IPR015902. Glyco_hydro_13.
    IPR013780. Glyco_hydro_13_b.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR006589. Glyco_hydro_13_sub_cat_dom.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view ]
    PANTHERi PTHR10357. PTHR10357. 1 hit.
    Pfami PF07821. Alpha-amyl_C2. 1 hit.
    PF00128. Alpha-amylase. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF001028. Alph-amls_plant. 1 hit.
    PRINTSi PR00110. ALPHAAMYLASE.
    SMARTi SM00642. Aamy. 1 hit.
    SM00810. Alpha-amyl_C2. 1 hit.
    [Graphical view ]
    SUPFAMi SSF51445. SSF51445. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence and analysis of the tuber crop potato."
      The Potato Genome Sequencing Consortium
      Nature 475:189-195(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: DM1-3 516 R44Imported.
    2. EnsemblPlants
      Submitted (FEB-2013) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: DM1-3 516 R44Imported.

    Entry informationi

    Entry nameiM1ADS0_SOLTU
    AccessioniPrimary (citable) accession number: M1ADS0
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 3, 2013
    Last sequence update: April 3, 2013
    Last modified: October 1, 2014
    This is version 9 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3