Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

HTH-type transcriptional regulator rpiR

Gene

A311_00125

Organism
Escherichia coli KTE146
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi50 – 69H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotation
Biological processTranscription, Transcription regulationPROSITE-ProRule annotation

Names & Taxonomyi

Protein namesi
Submitted name:
HTH-type transcriptional regulator rpiRImported
Gene namesi
ORF Names:A311_00125Imported
OrganismiEscherichia coli KTE146Imported
Taxonomic identifieri1182725 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000010643 Componenti: Unassembled WGS sequence

Structurei

3D structure databases

ProteinModelPortaliL4JL87.
SMRiL4JL87.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini14 – 90HTH rpiR-typeInterPro annotationAdd BLAST77
Domaini134 – 274SISInterPro annotationAdd BLAST141

Family and domain databases

CDDicd05013. SIS_RpiR. 1 hit.
Gene3Di1.10.10.10. 1 hit.
InterProiView protein in InterPro
IPR009057. Homeobox-like_sf.
IPR000281. HTH_RpiR.
IPR035472. RpiR-like_SIS.
IPR001347. SIS.
IPR036388. WH-like_DNA-bd_sf.
PfamiView protein in Pfam
PF01418. HTH_6. 1 hit.
PF01380. SIS. 1 hit.
SUPFAMiSSF46689. SSF46689. 1 hit.
PROSITEiView protein in PROSITE
PS51071. HTH_RPIR. 1 hit.
PS51464. SIS. 1 hit.

Sequencei

Sequence statusi: Complete.

L4JL87-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSQSEFDSAL PNGIGLAPYL RMKQEGMTEN ESRIVEWLLK PGNLSCAPAI
60 70 80 90 100
KDVAEALAVS EAMIVKVSKL LGFSGFRNLR SALEDYFSQS EQVLPSELAF
110 120 130 140 150
DEAPQDVVNK VFNITLRTIM EGQSIVNVDE IHRAARFFYQ ARQRDLYGAG
160 170 180 190 200
GSNAICADVQ HKFLRIGVRC QAYPDAHIMM MSASLLQEGD VVLVVTHSGR
210 220 230 240 250
TSDVKAAVEL AKKNGAKIIC ITHSYHSPIA KLADYIICSP APETPLLGRN
260 270 280 290
ASARILQLTL LDAFFVSVAQ LNIEQANINM QKTGAIVDFF SPGALK
Length:296
Mass (Da):32,362
Last modified:March 6, 2013 - v1
Checksum:i7946848F0798E200
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
ANWM01000003 Genomic DNA. Translation: ELG93697.1.
RefSeqiWP_000083216.1. NZ_KB733121.1.

Genome annotation databases

EnsemblBacteriaiELG93697; ELG93697; A311_00125.
PATRICifig|1182725.3.peg.128.

Similar proteinsi

Entry informationi

Entry nameiL4JL87_ECOLX
AccessioniPrimary (citable) accession number: L4JL87
Entry historyiIntegrated into UniProtKB/TrEMBL: March 6, 2013
Last sequence update: March 6, 2013
Last modified: November 22, 2017
This is version 25 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

Keywords - Technical termi

Complete proteomeImported