Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

L0QHV1 (L0QHV1_9MYCO) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 10. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names
EC=6.5.1.1 EMBL CCK58978.1
Gene names
ORF Names:BN42_20748 EMBL CCK58978.1
OrganismMycobacterium canettii CIPT 140070010 [Complete proteome] EMBL CCK58978.1
Taxonomic identifier1205674 [NCBI]
Taxonomic lineageBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeMycobacteriaceaeMycobacteriumMycobacterium tuberculosis complex

Protein attributes

Sequence length759 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Sequences

Sequence LengthMass (Da)Tools
L0QHV1 [UniParc].

Last modified March 6, 2013. Version 1.
Checksum: FBD16A6E2362F280

FASTA75983,669
        10         20         30         40         50         60 
MGSASEQRVT LTNADKVLYP ATGTTKSDIF DYYAGVAEVM LGHIAGRPAT RKRWPNGVDQ 

        70         80         90        100        110        120 
PAFFEKRLAL SAPRWLSRAT VAHRSGTTTY PIIDSATGLA WIAQQAALEV HVPQWRFVAE 

       130        140        150        160        170        180 
PGSGELNPGP ATRLVFDLDP GEGVMTAQLA EVARAVRDLL ADIGLVTFPV TSGSKGLHLY 

       190        200        210        220        230        240 
TPLDEPVSSR GATVLAKRVA QRLEQAMPAL VTSAMTKSLR AGKVFVDWSQ NSGSKTTIAP 

       250        260        270        280        290        300 
YSLRGRTHPT VAAPRTWAEL DDPALRQLSY DEVLTRIARD GDLLERLDAD APVADRLTRY 

       310        320        330        340        350        360 
RRMRDASKTP EPIPTAKPVT GDGNTFVIQE HHARRPHYDF RLERDGVLVS WAVPKNLPDT 

       370        380        390        400        410        420 
TSVNHLAIHT EDHPLEYATF EGAIPSGEYG AGKVIIWDSG TYDTEKFHDD PHTGEVIVNL 

       430        440        450        460        470        480 
HGGRISGRYA LIRTNGDRWL AHRLKNQKDQ KVFEFDNLAP MLATHGTVAG LKASQWAFEG 

       490        500        510        520        530        540 
KWDGYRLLVE ADHGAVRLRS RSGRDVTAEY PQLRALAEDL ADHHVVLDGE AVVLDSSGVP 

       550        560        570        580        590        600 
SFSQMQNRGR DTRVEFWAFD LLYLDGRSLL GTRYQDRRKL LETLANATSL TVPELLPGDG 

       610        620        630        640        650        660 
AQAFACSRKH GWEGVIAKRR DSRYQPGRRC ASWVKDKHWN TQEVVIGGWR AGEGGRSSGV 

       670        680        690        700        710        720 
GSLLMGIPGP GGLQFAGRVG TGLTERELAN LKEMLAPLHT DESPFDVPLP ARDAKGITYV 

       730        740        750 
KPALVAEVRY SEWTPEGRLR QSSWRGLRPD KKPSEVVRE 

« Hide

References

[1]Genoscope - CEA
Submitted (JUN-2012) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: CIPT140070010 EMBL CCI98657.1.
[2]Genoscope - CEA
Submitted (AUG-2012) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: CIPT 140070010 EMBL CCK58978.1.
[3]"Genomic analysis of smooth tubercle bacilli provides insights into ancestry and pathoadaptation of Mycobacterium tuberculosis."
Supply P., Marceau M., Mangenot S., Roche D., Rouanet C., Khanna V., Majlessi L., Criscuolo A., Tap J., Pawlik A., Fiette L., Orgeur M., Fabre M., Parmentier C., Frigui W., Simeone R., Boritsch E.C., Debrie A.S. expand/collapse author list , Willery E., Walker D., Quail M.A., Ma L., Bouchier C., Salvignol G., Sayes F., Cascioferro A., Seemann T., Barbe V., Locht C., Gutierrez M.C., Leclerc C., Bentley S.D., Stinear T.P., Brisse S., Medigue C., Parkhill J., Cruveiller S., Brosch R.
Nat. Genet. 45:172-179(2013) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: CIPT 140070010 EMBL CCK58978.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CAKK01000007 Genomic DNA. Translation: CCI98657.1.
FO203509 Genomic DNA. Translation: CCK58978.1.
RefSeqYP_007263668.1. NC_019951.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCCK58978; CCK58978; BN42_20748.
GeneID14364661.
KEGGmcx:BN42_20748.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameL0QHV1_9MYCO
AccessionPrimary (citable) accession number: L0QHV1
Entry history
Integrated into UniProtKB/TrEMBL: March 6, 2013
Last sequence update: March 6, 2013
Last modified: April 16, 2014
This is version 10 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)