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L0M0K5 (L0M0K5_ENTBF) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 12. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length440 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

D-xylopyranose = D-xylulose. RuleBase RU000609 HAMAP-Rule MF_00455 SAAS SAAS001998

Cofactor

Binds 2 magnesium ions per subunit By similarity. HAMAP-Rule MF_00455

Subunit structure

Homotetramer By similarity. RuleBase RU000610 HAMAP-Rule MF_00455 SAAS SAAS001998

Subcellular location

Cytoplasm By similarity RuleBase RU000610 HAMAP-Rule MF_00455 SAAS SAAS001998.

Sequence similarities

Belongs to the xylose isomerase family. RuleBase RU000609 HAMAP-Rule MF_00455

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site1011 By similarity HAMAP-Rule MF_00455
Active site1041 By similarity HAMAP-Rule MF_00455
Metal binding2321Magnesium 1 By similarity HAMAP-Rule MF_00455
Metal binding2681Magnesium 1 By similarity HAMAP-Rule MF_00455
Metal binding2681Magnesium 2 By similarity HAMAP-Rule MF_00455
Metal binding2711Magnesium 2 By similarity HAMAP-Rule MF_00455
Metal binding2961Magnesium 1 By similarity HAMAP-Rule MF_00455
Metal binding3071Magnesium 2 By similarity HAMAP-Rule MF_00455
Metal binding3091Magnesium 2 By similarity HAMAP-Rule MF_00455
Metal binding3391Magnesium 1 By similarity HAMAP-Rule MF_00455

Sequences

Sequence LengthMass (Da)Tools
L0M0K5 [UniParc].

Last modified March 6, 2013. Version 1.
Checksum: F18CB60011801231

FASTA44049,814
        10         20         30         40         50         60 
MQAYFDQLDR VRFEGPKTEN PLAFRHYNPD ELVLGKRMED HLRFAACYWH TFCWNGADMF 

        70         80         90        100        110        120 
GVGAFDRPWQ QPGEAIALAK RKADVAFEFF HKLNVPYYCF HDVDVSPEGA SLKEYLNNFA 

       130        140        150        160        170        180 
QMVDVLAEKQ QQSGVKLLWG TANCFTNPRY GAGAATNPDP EVFSWAATQV FTAMNATHKL 

       190        200        210        220        230        240 
GGENYVLWGG REGYESLLNT DLRQEREQIG RFMQMVVEHK HKIGFQGTLL IEPKPQEPTK 

       250        260        270        280        290        300 
HQYDYDASTV YGFLKQFGLE KEIKLNIEAN HATLAGHSFH HEIATAIALG LFGSVDANRG 

       310        320        330        340        350        360 
DPQLGWDTDQ FPNSVEENAL VMYEILKAGG FTTGGLNFDA KVRRQSTDKY DLFYGHIGAM 

       370        380        390        400        410        420 
DTMALSLKVA ARMIEGGELD KRVAKRYAGW NGELGQQILK GQMSLQDLAK YAEQHQLAPQ 

       430        440 
HQSGHQELLE NLVNHYLFDK 

« Hide

References

[1]"Complete Genome of Enterobacteriaceae Bacterium Strain FGI 57, a Strain Associated with Leaf-Cutter Ant Fungus Gardens."
Aylward F.O., Tremmel D.M., Bruce D.C., Chain P., Chen A., Walston Davenport K., Detter C., Han C.S., Han J., Huntemann M., Ivanova N.N., Kyrpides N.C., Markowitz V., Mavrommatis K., Nolan M., Pagani I., Pati A., Pitluck S. expand/collapse author list , Deshpande S., Goodwin L., Woyke T., Currie C.R.
Genome Announc. 1:E00238-12(2013) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: FGI 57 EMBL AGB76241.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP003938 Genomic DNA. Translation: AGB76241.1.
RefSeqYP_007338426.1. NC_020063.1.

3D structure databases

ProteinModelPortalL0M0K5.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAGB76241; AGB76241; D782_0162.
GeneID14441420.
KEGGebf:D782_0162.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01805.

Family and domain databases

Gene3D3.20.20.150. 1 hit.
HAMAPMF_00455. Xylose_isom_A.
InterProIPR013022. Xyl_isomerase-like_TIM-brl.
IPR013452. Xylose_isom_bac.
IPR001998. Xylose_isomerase.
[Graphical view]
PfamPF01261. AP_endonuc_2. 1 hit.
[Graphical view]
PRINTSPR00688. XYLOSISMRASE.
SUPFAMSSF51658. SSF51658. 1 hit.
TIGRFAMsTIGR02630. xylose_isom_A. 1 hit.
PROSITEPS51415. XYLOSE_ISOMERASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameL0M0K5_ENTBF
AccessionPrimary (citable) accession number: L0M0K5
Entry history
Integrated into UniProtKB/TrEMBL: March 6, 2013
Last sequence update: March 6, 2013
Last modified: June 11, 2014
This is version 12 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)