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Protein
Submitted name:

Transcriptional regulator NodD

Gene

nodD4

Organism
Rhizobium tropici CIAT 899
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi23 – 42H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation
Biological processTranscription, Transcription regulationPROSITE-ProRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Transcriptional regulator NodDImported
Gene namesi
Name:nodD4Imported
ORF Names:RTCIAT899_PB01560Imported
Encoded oniPlasmid pRtrCIAT899bImported
OrganismiRhizobium tropici CIAT 899Imported
Taxonomic identifieri698761 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupRhizobium
Proteomesi
  • UP000010996 Componenti: Plasmid pRtrCIAT899b

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini6 – 63HTH lysR-typeInterPro annotationAdd BLAST58

Phylogenomic databases

KOiK14657
OrthoDBiPOG091H0FQL

Family and domain databases

CDDicd08462 PBP2_NodD, 1 hit
Gene3Di1.10.10.10, 1 hit
InterProiView protein in InterPro
IPR005119 LysR_subst-bd
IPR037416 NodD_PBP2
IPR000847 Tscrpt_reg_HTH_LysR
IPR036388 WH-like_DNA-bd_sf
IPR036390 WH_DNA-bd_sf
PfamiView protein in Pfam
PF00126 HTH_1, 1 hit
PF03466 LysR_substrate, 1 hit
PRINTSiPR00039 HTHLYSR
SUPFAMiSSF46785 SSF46785, 1 hit
PROSITEiView protein in PROSITE
PS50931 HTH_LYSR, 1 hit

Sequencei

Sequence statusi: Complete.

L0LSC3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRFKGLDLNL LVVLDALMTE RNLTAAARSI NLSQPAMSAA VARLRSYFRD
60 70 80 90 100
DLFTMVGREL VPTPRAERLA VAVREALLYI QLSVIAWEPF DPAHSDRCFK
110 120 130 140 150
IILSDYVTLV FLEKVVERMA QEAPAISFEF LPVSDDFDEL LQRGDVDFLI
160 170 180 190 200
MPKVFMSKHP HAALFDDIFV CVGCSTNKQL SEPFTFEQYM SMGHVAVRFG
210 220 230 240 250
SGLRPAIDEW YLRERGFKRR IEVVVQSFSM IPPMLAGTDR IGTMPLRLAQ
260 270 280 290 300
HCAKTTPLRI MELPLPIATL TEAVQWPALH NSDAASLWMR ETLIREAARM
310 320
VSPPAAERQD APTMKPTRPK VYAG
Length:324
Mass (Da):36,601
Last modified:March 6, 2013 - v1
Checksum:iB9308D29401B7766
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP004017 Genomic DNA Translation: AGB73581.1
RefSeqiWP_004126101.1, NC_020061.1

Genome annotation databases

EnsemblBacteriaiAGB73581; AGB73581; RTCIAT899_PB01560
GeneIDi32530235
KEGGirtr:RTCIAT899_PB01560
PATRICifig|698761.4.peg.4348

Similar proteinsi

Entry informationi

Entry nameiL0LSC3_RHITR
AccessioniPrimary (citable) accession number: L0LSC3
Entry historyiIntegrated into UniProtKB/TrEMBL: March 6, 2013
Last sequence update: March 6, 2013
Last modified: March 28, 2018
This is version 35 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, PlasmidImported, Reference proteomeImported

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