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L0LK45 (L0LK45_RHITR) Unreviewed, UniProtKB/TrEMBL

Last modified January 22, 2014. Version 7. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:treS EMBL AGB71783.1
ORF Names:RTCIAT899_CH12010 EMBL AGB71783.1
OrganismRhizobium tropici CIAT 899 [Complete proteome] EMBL AGB71783.1
Taxonomic identifier698761 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupRhizobium

Protein attributes

Sequence length557 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processcarbohydrate metabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular_functioncatalytic activity

Inferred from electronic annotation. Source: InterPro

cation binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
L0LK45 [UniParc].

Last modified March 6, 2013. Version 1.
Checksum: ABA5E64B7B9FE0CC

FASTA55763,904
        10         20         30         40         50         60 
MSTIDRNLRY PSWHKDAVIY QLHVKSFFDA DGDGFGDFAG LTQKLDYLAS LGVNTIWLLP 

        70         80         90        100        110        120 
FYPSPRRDDG YDVLDYRGIN PQFGTIKDFT SFVKAAHARG MRVITELVIN HTSDQHPWFQ 

       130        140        150        160        170        180 
RARYAPPGSP ERDFYVWSET DDKFAETRII FVDSERSNWT WDPVARAYFW HRFYSHQPDL 

       190        200        210        220        230        240 
NYRNPEVVEA LLDIMRFWLK AGVDGFRLDA VPYLVERENT NNENLPETHA LLKLIRNMLD 

       250        260        270        280        290        300 
AERPGVILLA EANQWPDEAR EYFGTGDECH MAFHFPLMPR IFTAIAMGNA QPIITMVNQT 

       310        320        330        340        350        360 
QDIPSDCQWA IFLRNHDELT LEMVSEAERN FLWNTYASDE RARLNLGIRR RLSPLMDQDR 

       370        380        390        400        410        420 
RRVELLHMLL LSLPGSPVLY YGDEIGMGDN LDLGDRDGVR TPMQWSNGRN GGFSDAASDK 

       430        440        450        460        470        480 
LALPVIDDAQ FGYRAINVAA QENDPHSLLN WIRRVLAIRA QHPAFARGSI RFLSTDNTAV 

       490        500        510        520        530        540 
IAYAREYRND CVLFAANLAN NGQAVRLDLG PFLGKTPVEL FGETKFPVVE QASYSLTFQA 

       550 
YGYFLLSFES EAECFDD 

« Hide

References

[1]"Genomic basis of broad host range and environmental adaptability of Rhizobium tropici CIAT 899 and Rhizobium sp. PRF 81 which are used in inoculants for common bean (Phaseolus vulgaris L.)."
Ormeno-Orrillo E., Menna P., Almeida L.G., Ollero F.J., Nicolas M.F., Pains Rodrigues E., Shigueyoshi Nakatani A., Silva Batista J.S., Oliveira Chueire L.M., Souza R.C., Ribeiro Vasconcelos A.T., Megias M., Hungria M., Martinez-Romero E.
BMC Genomics 13:735-735(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: CIAT 899 EMBL AGB71783.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP004015 Genomic DNA. Translation: AGB71783.1.
RefSeqYP_007334329.1. NC_020059.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAGB71783; AGB71783; RTCIAT899_CH12010.
GeneID14429386.
KEGGrtr:RTCIAT899_CH12010.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK05343.

Family and domain databases

Gene3D2.60.40.1180. 1 hit.
3.20.20.80. 3 hits.
InterProIPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR012810. TreS/a-amylase_N.
[Graphical view]
PANTHERPTHR10357. PTHR10357. 1 hit.
PfamPF00128. Alpha-amylase. 1 hit.
[Graphical view]
SMARTSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMSSF51445. SSF51445. 2 hits.
TIGRFAMsTIGR02456. treS_nterm. 1 hit.
ProtoNetSearch...

Entry information

Entry nameL0LK45_RHITR
AccessionPrimary (citable) accession number: L0LK45
Entry history
Integrated into UniProtKB/TrEMBL: March 6, 2013
Last sequence update: March 6, 2013
Last modified: January 22, 2014
This is version 7 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)