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L0L1H0 (L0L1H0_METHD) Unreviewed, UniProtKB/TrEMBL

Last modified January 22, 2014. Version 7. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Metho_1955 EMBL AGB50129.1
OrganismMethanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) [Complete proteome] [HAMAP] EMBL AGB50129.1
Taxonomic identifier867904 [NCBI]
Taxonomic lineageArchaeaEuryarchaeotaMethanomicrobiaMethanosarcinalesMethanosarcinaceaeMethanomethylovorans

Protein attributes

Sequence length479 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the RuBisCO large chain family. RuleBase RU004228

Ontologies

Sequences

Sequence LengthMass (Da)Tools
L0L1H0 [UniParc].

Last modified March 6, 2013. Version 1.
Checksum: BA7412475E89F34D

FASTA47953,203
        10         20         30         40         50         60 
MNPIYADLVA SLNPKQQSYV NLQLPDPYNG EYLLSVFHLV PEGKLNILQA AAETAAESST 

        70         80         90        100        110        120 
GTNFKVNTET PFSKTMNALV YKLDLEQNLV WIAYPWRLFD RGGNIQNILT YIVGNILGIK 

       130        140        150        160        170        180 
EIKALKLLDV WFPSSMLEQY DGPSYTLDDM RKYLGVYDRP ILGTIVKPKM GLTSAEYAEV 

       190        200        210        220        230        240 
CYDFWAGGGD FVKNDEPQAN QDFCPYDKMV KHVKEAMDKA VKETGRNKVH SFNVSAADFD 

       250        260        270        280        290        300 
TMIERCEMIV NAGFEPGSYA FLIDGITAGW MAVQTLRRRY PGVFIHFHRA AHGAFTRPEN 

       310        320        330        340        350        360 
PIGFSVLVLS KFARLAGVSG IHTGTAGVGK MKGTPEEDVV AAHGILYMRS KGHFFEQTWT 

       370        380        390        400        410        420 
KIPENDKDAM HLVSEDSAHH VILEEDSWRG VKKCCPIVSG GLNPIRLKPF IDVMGNVDFI 

       430        440        450        460        470 
TTMGSGVHAH PGGTKDGAKA LVQACDAYLN KMDIAEYARE HSELAQAIDH FTKAQKDAM 

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References

[1]"Complete sequence of chromosome of Methanomethylovorans hollandica DSM 15978."
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Peters L., Mikhailova N., Held B., Kyrpides N., Mavromatis K., Ivanova N., Brettin T., Detter J.C., Han C. expand/collapse author list , Larimer F., Land M., Hauser L., Markowitz V., Cheng J.-F., Hugenholtz P., Woyke T., Wu D., Spring S., Schroeder M., Brambilla E., Klenk H.-P., Eisen J.A.
Submitted (FEB-2012) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 15978 / NBRC 107637 / DMS1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP003362 Genomic DNA. Translation: AGB50129.1.
RefSeqYP_007313659.1. NC_019977.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAGB50129; AGB50129; Metho_1955.
GeneID14406468.
KEGGmhz:Metho_1955.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01601.

Family and domain databases

Gene3D3.20.20.110. 1 hit.
3.30.70.150. 1 hit.
InterProIPR020878. RuBisCo_large_chain_AS.
IPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
IPR017444. RuBisCO_lsu_N.
[Graphical view]
PfamPF00016. RuBisCO_large. 2 hits.
PF02788. RuBisCO_large_N. 1 hit.
[Graphical view]
SUPFAMSSF51649. SSF51649. 2 hits.
SSF54966. SSF54966. 1 hit.
PROSITEPS00157. RUBISCO_LARGE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameL0L1H0_METHD
AccessionPrimary (citable) accession number: L0L1H0
Entry history
Integrated into UniProtKB/TrEMBL: March 6, 2013
Last sequence update: March 6, 2013
Last modified: January 22, 2014
This is version 7 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)