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L0K542 (L0K542_HALHC) Unreviewed, UniProtKB/TrEMBL

Last modified November 13, 2013. Version 6. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Halha_0382 EMBL AGB40377.1
OrganismHalobacteroides halobius (strain ATCC 35273 / DSM 5150 / MD-1) [Complete proteome] [HAMAP] EMBL AGB40377.1
Taxonomic identifier748449 [NCBI]
Taxonomic lineageBacteriaFirmicutesClostridiaHalanaerobialesHalobacteroidaceaeHalobacteroides

Protein attributes

Sequence length393 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Pyridoxal phosphate By similarity. RuleBase RU000479

Sequence similarities

Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family. RuleBase RU000479

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2222 Potential EMBL AGB40377.1
Chain23 – 393371 Potential EMBL AGB40377.1
PRO_5001099716

Sequences

Sequence LengthMass (Da)Tools
L0K542 [UniParc].

Last modified March 6, 2013. Version 1.
Checksum: 162C8229FDE4BAD2

FASTA39342,744
        10         20         30         40         50         60 
MEISSRVSQI DASPTLAISA QAKELCQQGK NVISLGAGEP DFNTPLHIKE AAKEAMAAGF 

        70         80         90        100        110        120 
TNYTATVGTK ELRTAVTDRF NKQKKIEYSS EQVIVSPGAK YALFLTLQVL VDEGDEVILP 

       130        140        150        160        170        180 
APYWVSYPQQ VKFAGGKMKA VETKEENDFK LTSQELKDSI TPQTKVLILN TPSNPTGAIY 

       190        200        210        220        230        240 
SQEELAKIAE IAIKEDIMII ADEIYQQISY DKEAVSIASL GEEIKEQTVI IDGVSKAYAM 

       250        260        270        280        290        300 
TGWRIGFAVG PQEVIAAMAC LQSHSTSSAN SIAQKASVAA LSGTHAPTEK MKKAFKQRRD 

       310        320        330        340        350        360 
LIVEQINQIP SFKAKKPAGA FYLFVNVKDA LGQKINGEKI TNDQKLANLL LQEAGVATIP 

       370        380        390 
GSFFGKDGYL RMSYATSESE IKTAINKIKD FLA 

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References

[1]"The complete genome of Halobacteroides halobius DSM 5150."
Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Peters L., Mikhailova N., Gu W., Kyrpides N., Mavromatis K., Ivanova N., Brettin T., Detter J.C., Han C. expand/collapse author list , Larimer F., Land M., Hauser L., Markowitz V., Cheng J.-F., Hugenholtz P., Woyke T., Wu D., Tindall B., Pomrenke H., Brambilla E., Klenk H.-P., Eisen J.A.
Submitted (FEB-2012) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 35273 / DSM 5150 / MD-1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP003359 Genomic DNA. Translation: AGB40377.1.
RefSeqYP_007314470.1. NC_019978.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAGB40377; AGB40377; Halha_0382.
GeneID14410218.
KEGGhhl:Halha_0382.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK00812.

Family and domain databases

Gene3D3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProIPR004839. Aminotransferase_I/II.
IPR004838. NHTrfase_class1_PyrdxlP-BS.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamPF00155. Aminotran_1_2. 1 hit.
[Graphical view]
SUPFAMSSF53383. SSF53383. 1 hit.
PROSITEPS00105. AA_TRANSFER_CLASS_1. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameL0K542_HALHC
AccessionPrimary (citable) accession number: L0K542
Entry history
Integrated into UniProtKB/TrEMBL: March 6, 2013
Last sequence update: March 6, 2013
Last modified: November 13, 2013
This is version 6 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)