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Protein
Submitted name:

Periplasmic alpha-amylase

Gene

VPBB_A1480

Organism
Vibrio parahaemolyticus BB22OP
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. alpha-amylase activity Source: InterPro
  2. calcium ion binding Source: InterPro

GO - Biological processi

  1. alpha-glucan catabolic process Source: InterPro
  2. cellular oligosaccharide catabolic process Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Periplasmic alpha-amylaseImported
Gene namesi
ORF Names:VPBB_A1480Imported
OrganismiVibrio parahaemolyticus BB22OPImported
Taxonomic identifieri1211705 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
ProteomesiUP000010823: Chromosome 2

Subcellular locationi

GO - Cellular componenti

  1. periplasmic space Source: InterPro
Complete GO annotation...

Family & Domainsi

Phylogenomic databases

KOiK01176.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR014635. A_amylase_MalS.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PIRSFiPIRSF036917. Alph_amls_MalS. 1 hit.
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.

Sequencei

Sequence statusi: Complete.

L0I6K2-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MKLNLITTTL LLASASAIAE PNITISTTTN SRDFPLSAEQ PLVVPLTKDG
60 70 80 90 100
YTLKITGVEG DCVAPDGQKV KFNKPIALNC GKPTELPLKV RFTGDYSFAY
110 120 130 140 150
DDAAKTLLFK REPKKAAKTE FKRPIPQVQC EVYQGGEVTI ALGDSFPEGT
160 170 180 190 200
KLRDAYSGQM VEVKEQKVSL TPSKDSGGLV LLEPVQKTKE AVPFDYRNAN
210 220 230 240 250
IYFVMVDRFN NADASNDNSY GRKKDGKDEV GTFHGGDLKG VIEKLDYIKS
260 270 280 290 300
LGTDAIWLSP IVEQVHGFVG GGDSGSFPFY AYHGYWTRDF TKIDENFGNE
310 320 330 340 350
EDLKTLVEEA HKRGLKVLMD AVINHSGYST LADLQFDGID VLKPNAELPK
360 370 380 390 400
KWGDWQPKAG ENWHSYHQNI DYQSPNWAKW WGGDWVRTGL PGYPAPGSSD
410 420 430 440 450
ITMSLAGLPD FITESNKTVT PPQWLLNNPG TRVEARDNYT VSDYLIEWQT
460 470 480 490 500
DWVKRFGIDG YRVDTVKHVE GEVWKRLKEE ASNSLEQWRK ENGKSGQPFW
510 520 530 540 550
MMGEVWGHTA YRSPYFDDGF DALINFDMQK KLDKGAACFS QMADTYQSYA
560 570 580 590 600
DTIANEKDFN PVSYMSSHDT ELFFSRFKDY GMQRNAANAL LLSPGAVQVY
610 620 630 640 650
YGDEVGRNIG PYADDFHQGT RSDMVWKLSD DKQALLKHWQ TLGQFRQAHP
660 670 680
AIGAGQHRVI EQEGAYVFSR SLGNDKVVVA FVGRDK
Length:686
Mass (Da):76,956
Last modified:March 6, 2013 - v1
Checksum:i228E50172861344D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003973 Genomic DNA. Translation: AGB12854.1.
RefSeqiYP_007301509.1. NC_019971.1.

Genome annotation databases

EnsemblBacteriaiAGB12854; AGB12854; VPBB_A1480.
GeneIDi14393762.
KEGGivpb:VPBB_A1480.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003973 Genomic DNA. Translation: AGB12854.1.
RefSeqiYP_007301509.1. NC_019971.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAGB12854; AGB12854; VPBB_A1480.
GeneIDi14393762.
KEGGivpb:VPBB_A1480.

Phylogenomic databases

KOiK01176.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR014635. A_amylase_MalS.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PIRSFiPIRSF036917. Alph_amls_MalS. 1 hit.
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Complete Genome Sequence of Prepandemic Vibrio parahaemolyticus BB22OP."
    Jensen R.V., DePasquale S.M., Harbolick E.A., Hong T., Kernell A.L., Kruchko D.H., Modise T., Smith C.E., McCarter L.L., Stevens A.M.
    Genome Announc. 1:E00002-E00012(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BB22OPImported.

Entry informationi

Entry nameiL0I6K2_VIBPH
AccessioniPrimary (citable) accession number: L0I6K2
Entry historyi
Integrated into UniProtKB/TrEMBL: March 6, 2013
Last sequence update: March 6, 2013
Last modified: January 7, 2015
This is version 10 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.