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Protein

Alpha-amylase

Gene

VPBB_A0417

Organism
Vibrio parahaemolyticus BB22OP
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units.UniRule annotation

GO - Molecular functioni

  1. alpha-amylase activity Source: UniProtKB-EC
  2. cation binding Source: InterPro

GO - Biological processi

  1. carbohydrate metabolic process Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseUniRule annotationImported, Hydrolase

Keywords - Biological processi

Carbohydrate metabolismUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Alpha-amylaseUniRule annotation (EC:3.2.1.1UniRule annotation)
Gene namesi
ORF Names:VPBB_A0417Imported
OrganismiVibrio parahaemolyticus BB22OPImported
Taxonomic identifieri1211705 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
ProteomesiUP000010823: Chromosome 2

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyl hydrolase 13 family.UniRule annotation

Phylogenomic databases

KOiK01176.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PRINTSiPR00110. ALPHAAMYLASE.
SUPFAMiSSF51445. SSF51445. 1 hit.

Sequencei

Sequence statusi: Complete.

L0I1L5-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MSGLQETQSA GANVILHAFD WKYADIAQRA NEIHELGYGS VLVSPPMKSA
60 70 80 90 100
HDERWWQRYQ PQDYRVIDNA LGDTQDFIYM VRELERVGVL VYADVVFNHM
110 120 130 140 150
ANEAHLRRDL QYPRQDVLDQ YRQDEQKYLP LKLFGDLSKP LFSEEDFVEA
160 170 180 190 200
FGIKDWKDKW QVQNGRITGG PTDPGLPTLR VCEHVVEQQR AYLKALKAIG
210 220 230 240 250
VKGFRIDAAK HMTLEHLKRV WTDDITQDVH IFGEIITDGG ATEEEYQLFL
260 270 280 290 300
EPYLQETRLG AYDFPLFSTI FKAFSKKGSF KSLIDPYCFG QALSNGRAIT
310 320 330 340 350
FVVTHDIPNN DVFLDLIMDE EDEWIAYAYI LGRDGGVPLV YTDLDTSGIK
360 370 380 390 400
NKNGKPRWKD AWNDPRMAKM IAFHNVTHGE SMTVLEGNDD MLVLKRGEKG
410 420 430 440
IVVLNKSTRA QSLSLKTECD WFDLMSDQSV KAGIELKVPA KSFMLLVQK
Length:449
Mass (Da):51,387
Last modified:March 6, 2013 - v1
Checksum:iFFCB4BFB541ECFDC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003973 Genomic DNA. Translation: AGB11791.1.
RefSeqiYP_007300446.1. NC_019971.1.

Genome annotation databases

EnsemblBacteriaiAGB11791; AGB11791; VPBB_A0417.
GeneIDi14393830.
KEGGivpb:VPBB_A0417.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003973 Genomic DNA. Translation: AGB11791.1.
RefSeqiYP_007300446.1. NC_019971.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAGB11791; AGB11791; VPBB_A0417.
GeneIDi14393830.
KEGGivpb:VPBB_A0417.

Phylogenomic databases

KOiK01176.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PRINTSiPR00110. ALPHAAMYLASE.
SUPFAMiSSF51445. SSF51445. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Complete Genome Sequence of Prepandemic Vibrio parahaemolyticus BB22OP."
    Jensen R.V., DePasquale S.M., Harbolick E.A., Hong T., Kernell A.L., Kruchko D.H., Modise T., Smith C.E., McCarter L.L., Stevens A.M.
    Genome Announc. 1:E00002-E00012(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: BB22OPImported.

Entry informationi

Entry nameiL0I1L5_VIBPH
AccessioniPrimary (citable) accession number: L0I1L5
Entry historyi
Integrated into UniProtKB/TrEMBL: March 6, 2013
Last sequence update: March 6, 2013
Last modified: January 7, 2015
This is version 12 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.