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L0HRV9 (L0HRV9_VIBPH) Unreviewed, UniProtKB/TrEMBL

Last modified January 22, 2014. Version 7. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
ORF Names:VPBB_0018 EMBL AGB08545.1
OrganismVibrio parahaemolyticus BB22OP [Complete proteome] EMBL AGB08545.1
Taxonomic identifier1211705 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio

Protein attributes

Sequence length694 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
L0HRV9 [UniParc].

Last modified March 6, 2013. Version 1.
Checksum: 15C6C8A7CF062990

FASTA69478,706
        10         20         30         40         50         60 
MKKTILALSI GLLSACSQIP ENAIVLSVGD DTAVLEPNSD GLLVAEQKLE KGNYTFTIAD 

        70         80         90        100        110        120 
SKQTCGNSFA LAEESRIKFN TPLKMDNCAT DTSMPLRIFK ANTYLFTLNP DTNELTVKIK 

       130        140        150        160        170        180 
PKQSQDITYS CPVATDTAKT INVAQTFTDG TVVRDALTGQ EATVANGSVT MQPGPMSQGL 

       190        200        210        220        230        240 
LLLEEVEQQA DKPFSWDNAT VYFVMTDRFY NGNPDNDNSY GRSKDGKYEI GTFHGGDLAG 

       250        260        270        280        290        300 
LTKKLDYIES LGVNAIWITS PLEQIHGWVG GGDKGDFKHY GYHGYYHQDW TKLDANMGTK 

       310        320        330        340        350        360 
DELRTFIDTA HKKGIRVIWD VVMNHTGYAT LADMQEFGFG QLYLDDQEAK QVLGEKWTDW 

       370        380        390        400        410        420 
QPKSGQSWHS FNDYIKYGDS EAWEKWWGKD WIRTDIGDYD APGYNDITMS LNYLPDLKTE 

       430        440        450        460        470        480 
STQKTGLPNF FRNKNTNAQD ELKTPREHLI TWLSDWVRDY GIDGFRVDTA KHVEMEAWAE 

       490        500        510        520        530        540 
LKASTSQALA EWKQNHPDKA LDDLPFWMTG EVWAHSVVKS PYFDNGFDSI INFEFQSDVA 

       550        560        570        580        590        600 
PKALKCFAQL DNDYRRYAER INSDPEFNVL SYLSSHDTQL FWSARSRSFD DQARAANALM 

       610        620        630        640        650        660 
LAPGAVQIYY GDEIARDFGV TGSDPTQGTR SDMPWDKIHG EREDLLQHWQ KLGEFRQRHP 

       670        680        690 
AVAQGKHITR NQEGYYAFER QYQDDKVLIV YTGE 

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References

[1]"Complete Genome Sequence of Prepandemic Vibrio parahaemolyticus BB22OP."
Jensen R.V., DePasquale S.M., Harbolick E.A., Hong T., Kernell A.L., Kruchko D.H., Modise T., Smith C.E., McCarter L.L., Stevens A.M.
Genome Announc. 1:E00002-E00012(2013) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: BB22OP EMBL AGB08545.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP003972 Genomic DNA. Translation: AGB08545.1.
RefSeqYP_007273719.1. NC_019955.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAGB08545; AGB08545; VPBB_0018.
GeneID14372149.
KEGGvpb:VPBB_0018.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01176.

Family and domain databases

Gene3D3.20.20.80. 1 hit.
InterProIPR014635. A_amylase_MalS.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERPTHR10357. PTHR10357. 1 hit.
PfamPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PIRSFPIRSF036917. Alph_amls_MalS. 1 hit.
SMARTSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMSSF51445. SSF51445. 1 hit.
ProtoNetSearch...

Entry information

Entry nameL0HRV9_VIBPH
AccessionPrimary (citable) accession number: L0HRV9
Entry history
Integrated into UniProtKB/TrEMBL: March 6, 2013
Last sequence update: March 6, 2013
Last modified: January 22, 2014
This is version 7 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)