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L0GWD2

- L0GWD2_9GAMM

UniProt

L0GWD2 - L0GWD2_9GAMM

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Protein

Ribulose bisphosphate carboxylase large chain

Gene
cbbL, Thimo_0765
Organism
Thioflavicoccus mobilis 8321
Status
Unreviewed - Annotation score: 3 out of 5 - Protein inferred from homologyi

Functioni

RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site By similarity.UniRule annotation

Catalytic activityi

2 3-phospho-D-glycerate + 2 H+ = D-ribulose 1,5-bisphosphate + CO2 + H2O.UniRule annotation
3-phospho-D-glycerate + 2-phosphoglycolate = D-ribulose 1,5-bisphosphate + O2.UniRule annotation

Cofactori

Binds 1 magnesium ion per subunit By similarity.UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei115 – 1151Substrate; in homodimeric partner By similarityUniRule annotation
Binding sitei165 – 1651Substrate By similarityUniRule annotation
Active sitei167 – 1671Proton acceptor By similarityUniRule annotation
Binding sitei169 – 1691Substrate By similarityUniRule annotation
Metal bindingi193 – 1931Magnesium; via carbamate group By similarityUniRule annotation
Metal bindingi195 – 1951Magnesium By similarityUniRule annotation
Metal bindingi196 – 1961Magnesium By similarityUniRule annotation
Active sitei286 – 2861Proton acceptor By similarityUniRule annotation
Binding sitei287 – 2871Substrate By similarityUniRule annotation
Binding sitei319 – 3191Substrate By similarityUniRule annotation
Sitei326 – 3261Transition state stabilizer By similarityUniRule annotation
Binding sitei371 – 3711Substrate By similarityUniRule annotation

GO - Molecular functioni

  1. magnesium ion binding Source: UniProtKB-HAMAP
  2. monooxygenase activity Source: UniProtKB-KW
  3. ribulose-bisphosphate carboxylase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. reductive pentose-phosphate cycle Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

LyaseUniRule annotation, MonooxygenaseUniRule annotation, Oxidoreductase

Keywords - Biological processi

Calvin cycleUniRule annotation, Carbon dioxide fixationUniRule annotation

Keywords - Ligandi

MagnesiumUniRule annotation, Metal-bindingUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Ribulose bisphosphate carboxylase large chainUniRule annotation (EC:4.1.1.39UniRule annotation)
Short name:
RuBisCO large subunitUniRule annotation
Gene namesi
Name:cbbLUniRule annotation
ORF Names:Thimo_0765Imported
OrganismiThioflavicoccus mobilis 8321Imported
Taxonomic identifieri765912 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaChromatialesChromatiaceaeThioflavicoccus
ProteomesiUP000010816: Chromosome

PTM / Processingi

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei193 – 1931N6-carboxylysine By similarityUniRule annotation

Interactioni

Subunit structurei

Heterohexadecamer of 8 large chains and 8 small chains By similarity.UniRule annotation

Structurei

3D structure databases

ProteinModelPortaliL0GWD2.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

KOiK01601.

Family and domain databases

Gene3Di3.20.20.110. 1 hit.
3.30.70.150. 1 hit.
HAMAPiMF_01338. RuBisCO_L_type1.
InterProiIPR020878. RuBisCo_large_chain_AS.
IPR020888. RuBisCO_lsu.
IPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
IPR017444. RuBisCO_lsu_N.
[Graphical view]
PfamiPF00016. RuBisCO_large. 1 hit.
PF02788. RuBisCO_large_N. 1 hit.
[Graphical view]
SUPFAMiSSF51649. SSF51649. 1 hit.
SSF54966. SSF54966. 1 hit.
PROSITEiPS00157. RUBISCO_LARGE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

L0GWD2-1 [UniParc]FASTAAdd to Basket

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MAKTYNAGVK DYRETYWMPD YTPKDTDILA CFKITPQPGV PREEAAAAVA    50
AESSTGTWTT VWTDLLTDLD YYKGRAYAIE DVPGDDERFY AFIAYPIDLF 100
EEGSVVNVFT SLVGNVFGFK AVRTLRLEDV RFPIAYVMTC NGPPHGIQVE 150
RDIMNKYGRP LLGCTIKPKL GLSAKNYGRA VYECLRGGLD FTKDDENVNS 200
QPFMRWRQRF DFVMEAIDKA ESETGERKGH YLNVTAPTPD EMFKRAEHAK 250
ELGAPIIMHD YITGGWCANT GLAQWCRDNG VLLHIHRAMH AVIDRHPHHG 300
IHFRVLAKLL RLSGGDHLHT GTVVGKLEGD RAATLGWIDL LRESYVEEDR 350
SRGIFFDQDW GSMPGVFAVA SGGIHVWHMP ALVTIFGDDA VLQFGGGTLG 400
HPWGNAAGAA ANRVALEACV EARNRGVAIE KEGKEVLTAA ANNSPELKAA 450
METWKEIKFE FDTVDKLDVA HK 472
Length:472
Mass (Da):52,514
Last modified:March 6, 2013 - v1
Checksum:i265A348FD4ADD3DF
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP003051 Genomic DNA. Translation: AGA89604.1.
RefSeqiWP_015279751.1. NC_019940.1.
YP_007243234.1. NC_019940.1.

Genome annotation databases

EnsemblBacteriaiAGA89604; AGA89604; Thimo_0765.
GeneIDi14303029.
KEGGitmb:Thimo_0765.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP003051 Genomic DNA. Translation: AGA89604.1 .
RefSeqi WP_015279751.1. NC_019940.1.
YP_007243234.1. NC_019940.1.

3D structure databases

ProteinModelPortali L0GWD2.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AGA89604 ; AGA89604 ; Thimo_0765 .
GeneIDi 14303029.
KEGGi tmb:Thimo_0765.

Phylogenomic databases

KOi K01601.

Family and domain databases

Gene3Di 3.20.20.110. 1 hit.
3.30.70.150. 1 hit.
HAMAPi MF_01338. RuBisCO_L_type1.
InterProi IPR020878. RuBisCo_large_chain_AS.
IPR020888. RuBisCO_lsu.
IPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
IPR017444. RuBisCO_lsu_N.
[Graphical view ]
Pfami PF00016. RuBisCO_large. 1 hit.
PF02788. RuBisCO_large_N. 1 hit.
[Graphical view ]
SUPFAMi SSF51649. SSF51649. 1 hit.
SSF54966. SSF54966. 1 hit.
PROSITEi PS00157. RUBISCO_LARGE. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of chromosome of Thioflavicoccus mobilis 8321."
    US DOE Joint Genome Institute
    Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Ovchinnikova G., Lu M., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I., Vogl K.
    , Liu Z., Imhoff J., Thiel V., Frigaard N.-U., Bryant D., Woyke T.
    Submitted (SEP-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: 8321Imported.

Entry informationi

Entry nameiL0GWD2_9GAMM
AccessioniPrimary (citable) accession number: L0GWD2
Entry historyi
Integrated into UniProtKB/TrEMBL: March 6, 2013
Last sequence update: March 6, 2013
Last modified: September 3, 2014
This is version 10 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Miscellaneous

The basic functional RuBisCO is composed of a large chain homodimer in a "head-to-tail" conformation. In form I RuBisCO this homodimer is arranged in a barrel-like tetramer with the small subunits forming a tetrameric "cap" on each end of the "barrel" By similarity.UniRule annotation

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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