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L0GFC6 (L0GFC6_PSEST) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 7. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length548 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the glycosyl hydrolase 13 family. RuleBase RU003615

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2121 Potential EMBL AGA85453.1
Chain22 – 548527 Potential EMBL AGA85453.1
PRO_5001092000

Sequences

Sequence LengthMass (Da)Tools
L0GFC6 [UniParc].

Last modified March 6, 2013. Version 1.
Checksum: 279383756F308082

FASTA54859,721
        10         20         30         40         50         60 
MSHILRAAAL AAILLPLPAL ADQAGKSPNA VRYHGGDEII LQGFHWNVVR EAPNNWYNIL 

        70         80         90        100        110        120 
RQQASTIAAD GFSAIWMPVP WRDFSSWSEG GKSGGGEGYF WHDFNKNGRY GSDTQLRQAA 

       130        140        150        160        170        180 
GALGGAGVKV LYDVVPNHMN RGYPNKEINL PAGQGFWRND CADPGNYPND CDDGDRFVGG 

       190        200        210        220        230        240 
DADLNTGHPQ VYGMFRDEFA NLRSQYGAGG FRFDFVRGFA PERVNSWMTD SADNSFCVGE 

       250        260        270        280        290        300 
LWKGPSEYPS WDWRNTASWQ QIIKDWSDRA KCPVFDFALK ERMQNGSIAD WKNGLNGNPD 

       310        320        330        340        350        360 
PRWREVAVTF VDNHDTGYSP GQNGGQHHWA LQDGLIRQAY AYILTSPGTP VVYWSHMYDW 

       370        380        390        400        410        420 
GYGDFIRQLI QVRRTAGVRA DSAISFHSGY SGLVATVSGT QQTLVVALNS NLSNPGQVAS 

       430        440        450        460        470        480 
ASFSEAVNAS NGQVRVWRSG TGSGGGEPGA LVKVNFRCDN GVTQPGDSVY AAGSVGQLGN 

       490        500        510        520        530        540 
WSPASAVRLT DTSGYPTWKG SISLPAGQNV EWKCLIRNEA NATLVRQWQG GANNSLTPSE 


GATTVGRL 

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References

[1]"Complete sequence of chromosome of Pseudomonas stutzeri RCH2."
US DOE Joint Genome Institute
Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Ovchinnikova G., Zeytun A., Lu M., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I. expand/collapse author list , Chakraborty R., Arkin A., Dehal P., Wall J., Hazen T., Woyke T.
Submitted (OCT-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: RCH2 EMBL AGA85453.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP003071 Genomic DNA. Translation: AGA85453.1.
RefSeqYP_007239083.1. NC_019936.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAGA85453; AGA85453; Psest_0860.
GeneID14298715.
KEGGpsh:Psest_0860.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01176.

Family and domain databases

Gene3D2.60.40.10. 1 hit.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProIPR006046. Alpha_amylase.
IPR013784. Carb-bd-like_fold.
IPR002044. CBM_fam20.
IPR015165. DUF1921.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
[Graphical view]
PANTHERPTHR10357. PTHR10357. 1 hit.
PfamPF00128. Alpha-amylase. 1 hit.
PF00686. CBM_20. 1 hit.
PF09081. DUF1921. 1 hit.
[Graphical view]
PRINTSPR00110. ALPHAAMYLASE.
SMARTSM01065. CBM_2. 1 hit.
[Graphical view]
SUPFAMSSF49452. SSF49452. 1 hit.
SSF51445. SSF51445. 1 hit.
PROSITEPS51166. CBM20. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameL0GFC6_PSEST
AccessionPrimary (citable) accession number: L0GFC6
Entry history
Integrated into UniProtKB/TrEMBL: March 6, 2013
Last sequence update: March 6, 2013
Last modified: June 11, 2014
This is version 7 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)