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L0GFC6

- L0GFC6_PSEST

UniProt

L0GFC6 - L0GFC6_PSEST

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Protein
Submitted name:

Glycosidase

Gene

Psest_0860

Organism
Pseudomonas stutzeri RCH2
Status
Unreviewed - Annotation score: 1 out of 5- Protein inferred from homologyi

Functioni

GO - Molecular functioni

  1. cation binding Source: InterPro
  2. hydrolase activity, acting on glycosyl bonds Source: UniProtKB-KW
  3. starch binding Source: InterPro

GO - Biological processi

  1. carbohydrate metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseImported, Hydrolase

Names & Taxonomyi

Protein namesi
Submitted name:
GlycosidaseImported
Gene namesi
ORF Names:Psest_0860Imported
OrganismiPseudomonas stutzeri RCH2Imported
Taxonomic identifieri644801 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
ProteomesiUP000010820: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2121 PotentialImportedAdd
BLAST
Chaini22 – 548527 PotentialImportedPRO_5001092000Add
BLAST

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyl hydrolase 13 family.UniRule annotation

Keywords - Domaini

SignalImported

Phylogenomic databases

KOiK01176.

Family and domain databases

Gene3Di2.60.40.10. 1 hit.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR006046. Alpha_amylase.
IPR013784. Carb-bd-like_fold.
IPR002044. CBM_fam20.
IPR015165. DUF1921.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF00686. CBM_20. 1 hit.
PF09081. DUF1921. 1 hit.
[Graphical view]
PRINTSiPR00110. ALPHAAMYLASE.
SMARTiSM01065. CBM_2. 1 hit.
[Graphical view]
SUPFAMiSSF49452. SSF49452. 1 hit.
SSF51445. SSF51445. 1 hit.
PROSITEiPS51166. CBM20. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

L0GFC6-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSHILRAAAL AAILLPLPAL ADQAGKSPNA VRYHGGDEII LQGFHWNVVR
60 70 80 90 100
EAPNNWYNIL RQQASTIAAD GFSAIWMPVP WRDFSSWSEG GKSGGGEGYF
110 120 130 140 150
WHDFNKNGRY GSDTQLRQAA GALGGAGVKV LYDVVPNHMN RGYPNKEINL
160 170 180 190 200
PAGQGFWRND CADPGNYPND CDDGDRFVGG DADLNTGHPQ VYGMFRDEFA
210 220 230 240 250
NLRSQYGAGG FRFDFVRGFA PERVNSWMTD SADNSFCVGE LWKGPSEYPS
260 270 280 290 300
WDWRNTASWQ QIIKDWSDRA KCPVFDFALK ERMQNGSIAD WKNGLNGNPD
310 320 330 340 350
PRWREVAVTF VDNHDTGYSP GQNGGQHHWA LQDGLIRQAY AYILTSPGTP
360 370 380 390 400
VVYWSHMYDW GYGDFIRQLI QVRRTAGVRA DSAISFHSGY SGLVATVSGT
410 420 430 440 450
QQTLVVALNS NLSNPGQVAS ASFSEAVNAS NGQVRVWRSG TGSGGGEPGA
460 470 480 490 500
LVKVNFRCDN GVTQPGDSVY AAGSVGQLGN WSPASAVRLT DTSGYPTWKG
510 520 530 540
SISLPAGQNV EWKCLIRNEA NATLVRQWQG GANNSLTPSE GATTVGRL
Length:548
Mass (Da):59,721
Last modified:March 6, 2013 - v1
Checksum:i279383756F308082
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003071 Genomic DNA. Translation: AGA85453.1.
RefSeqiWP_015275796.1. NC_019936.1.
YP_007239083.1. NC_019936.1.

Genome annotation databases

EnsemblBacteriaiAGA85453; AGA85453; Psest_0860.
GeneIDi14298715.
KEGGipsh:Psest_0860.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003071 Genomic DNA. Translation: AGA85453.1 .
RefSeqi WP_015275796.1. NC_019936.1.
YP_007239083.1. NC_019936.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AGA85453 ; AGA85453 ; Psest_0860 .
GeneIDi 14298715.
KEGGi psh:Psest_0860.

Phylogenomic databases

KOi K01176.

Family and domain databases

Gene3Di 2.60.40.10. 1 hit.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProi IPR006046. Alpha_amylase.
IPR013784. Carb-bd-like_fold.
IPR002044. CBM_fam20.
IPR015165. DUF1921.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
[Graphical view ]
PANTHERi PTHR10357. PTHR10357. 1 hit.
Pfami PF00128. Alpha-amylase. 1 hit.
PF00686. CBM_20. 1 hit.
PF09081. DUF1921. 1 hit.
[Graphical view ]
PRINTSi PR00110. ALPHAAMYLASE.
SMARTi SM01065. CBM_2. 1 hit.
[Graphical view ]
SUPFAMi SSF49452. SSF49452. 1 hit.
SSF51445. SSF51445. 1 hit.
PROSITEi PS51166. CBM20. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of chromosome of Pseudomonas stutzeri RCH2."
    US DOE Joint Genome Institute
    Lucas S., Han J., Lapidus A., Cheng J.-F., Goodwin L., Pitluck S., Peters L., Ovchinnikova G., Zeytun A., Lu M., Detter J.C., Han C., Tapia R., Land M., Hauser L., Kyrpides N., Ivanova N., Pagani I.
    , Chakraborty R., Arkin A., Dehal P., Wall J., Hazen T., Woyke T.
    Submitted (OCT-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: RCH2Imported.

Entry informationi

Entry nameiL0GFC6_PSEST
AccessioniPrimary (citable) accession number: L0GFC6
Entry historyi
Integrated into UniProtKB/TrEMBL: March 6, 2013
Last sequence update: March 6, 2013
Last modified: October 29, 2014
This is version 9 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3