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L0GD23 (L0GD23_HUMAN) Unreviewed, UniProtKB/TrEMBL

Last modified October 16, 2013. Version 7. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:HLA-C EMBL AGA84613.1
OrganismHomo sapiens (Human) EMBL AGA84613.1
Taxonomic identifier9606 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Protein attributes

Sequence length273 AA.
Sequence statusFragment.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the MHC class I family. RuleBase RU004439

Contains Ig-like C1-type (immunoglobulin-like) domain. SAAS SAAS027648

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Experimental info

Non-terminal residue11 EMBL AGA84613.1
Non-terminal residue2731 EMBL AGA84613.1

Sequences

Sequence LengthMass (Da)Tools
L0GD23 [UniParc].

Last modified March 6, 2013. Version 1.
Checksum: 88640BBBB73B42EA

FASTA27331,728
        10         20         30         40         50         60 
SHSMKYFFTS VSRPGRGEPR FISVGYVDDT QFVRFDSDAA SPRGEPRAPW VEQEGPEYWD 

        70         80         90        100        110        120 
RETQKYKRQA QTDRVSLRNL RGYYNQSEAG SHTLQWMCGC DLGPDGRLLR GYDQYAYDGK 

       130        140        150        160        170        180 
DYIALNEDLR SWTAADTAAQ ITQRKWEAAR EAEQRRAYLE GTCVEWLRRY LENGKETLQR 

       190        200        210        220        230        240 
AEHPKTHVTH HPVSDHEATL RCWALGFYPA EITLTWQWDG EDQTQDTELV ETRPAGDGTF 

       250        260        270 
QKWAAVMVPS GEEQRYTCHV QHEGLPEPLT LRW 

« Hide

References

[1]"A novel HLA-C*01:02 allele was identified."
Zhu F., Wang W., He J.
Submitted (OCT-2012) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
[2]"A novel HLA allele, HLA-C*01:02:18, was identified by polymerase chain reaction sequence-based typing in a Chinese leukemia patient."
Tao S.D., Zhang W., Zhu F.M., He J., Lv H.J.
Tissue Antigens 82:65-66(2013) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
JX915742 Genomic DNA. Translation: AGA84613.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Proteomic databases

PRIDEL0GD23.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Family and domain databases

Gene3D2.60.40.10. 1 hit.
3.30.500.10. 1 hit.
InterProIPR007110. Ig-like_dom.
IPR013783. Ig-like_fold.
IPR003006. Ig/MHC_CS.
IPR003597. Ig_C1-set.
IPR011161. MHC_I-like_Ag-recog.
IPR011162. MHC_I/II-like_Ag-recog.
IPR027648. MHC_I_a.
IPR001039. MHC_I_a_a1/a2.
[Graphical view]
PfamPF07654. C1-set. 1 hit.
PF00129. MHC_I. 1 hit.
[Graphical view]
PRINTSPR01638. MHCCLASSI.
SMARTSM00407. IGc1. 1 hit.
[Graphical view]
SUPFAMSSF54452. SSF54452. 1 hit.
PROSITEPS50835. IG_LIKE. 1 hit.
PS00290. IG_MHC. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameL0GD23_HUMAN
AccessionPrimary (citable) accession number: L0GD23
Entry history
Integrated into UniProtKB/TrEMBL: March 6, 2013
Last sequence update: March 6, 2013
Last modified: October 16, 2013
This is version 7 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.