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K9YWC7

- K9YWC7_DACSA

UniProt

K9YWC7 - K9YWC7_DACSA

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Protein

Ribulose bisphosphate carboxylase large chain

Gene

cbbL

Organism
Dactylococcopsis salina PCC 8305
Status
Unreviewed - Annotation score: 3 out of 5- Protein inferred from homologyi

Functioni

RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site.UniRule annotation

Catalytic activityi

2 3-phospho-D-glycerate + 2 H+ = D-ribulose 1,5-bisphosphate + CO2 + H2O.UniRule annotation
3-phospho-D-glycerate + 2-phosphoglycolate = D-ribulose 1,5-bisphosphate + O2.UniRule annotation

Cofactori

Note: Binds 1 magnesium ion per subunit.UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei121 – 1211Substrate; in homodimeric partnerUniRule annotation
Binding sitei171 – 1711SubstrateUniRule annotation
Active sitei173 – 1731Proton acceptorUniRule annotation
Binding sitei175 – 1751SubstrateUniRule annotation
Metal bindingi199 – 1991Magnesium; via carbamate groupUniRule annotation
Metal bindingi201 – 2011MagnesiumUniRule annotation
Metal bindingi202 – 2021MagnesiumUniRule annotation
Active sitei292 – 2921Proton acceptorUniRule annotation
Binding sitei293 – 2931SubstrateUniRule annotation
Binding sitei325 – 3251SubstrateUniRule annotation
Sitei332 – 3321Transition state stabilizerUniRule annotation
Binding sitei377 – 3771SubstrateUniRule annotation

GO - Molecular functioni

  1. magnesium ion binding Source: UniProtKB-HAMAP
  2. monooxygenase activity Source: UniProtKB-KW
  3. ribulose-bisphosphate carboxylase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. photorespiration Source: UniProtKB-KW
  2. reductive pentose-phosphate cycle Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

LyaseUniRule annotation, MonooxygenaseUniRule annotation, Oxidoreductase

Keywords - Biological processi

Calvin cycleUniRule annotation, Carbon dioxide fixationUniRule annotation, PhotorespirationUniRule annotation

Keywords - Ligandi

MagnesiumUniRule annotation, Metal-bindingUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Ribulose bisphosphate carboxylase large chainUniRule annotation (EC:4.1.1.39UniRule annotation)
Short name:
RuBisCO large subunitUniRule annotation
Gene namesi
Name:cbbLUniRule annotation
Synonyms:rbcLUniRule annotation
ORF Names:Dacsa_1767Imported
OrganismiDactylococcopsis salina PCC 8305Imported
Taxonomic identifieri13035 [NCBI]
Taxonomic lineageiBacteriaCyanobacteriaOscillatoriophycideaeChroococcalesDactylococcopsis
ProteomesiUP000010482: Chromosome

PTM / Processingi

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei199 – 1991N6-carboxylysineUniRule annotation
Disulfide bondi245 – 245Interchain; in linked formUniRule annotation

Post-translational modificationi

The disulfide bond which can form in the large chain dimeric partners within the hexadecamer appears to be associated with oxidative stress and protein turnover.UniRule annotation

Keywords - PTMi

Disulfide bondUniRule annotation

Interactioni

Subunit structurei

Heterohexadecamer of 8 large chains and 8 small chains; disulfide-linked. The disulfide link is formed within the large subunit homodimers.UniRule annotation

Family & Domainsi

Sequence similaritiesi

Belongs to the RuBisCO large chain family. Type I subfamily.UniRule annotation

Phylogenomic databases

KOiK01601.

Family and domain databases

Gene3Di3.20.20.110. 1 hit.
3.30.70.150. 1 hit.
HAMAPiMF_01338. RuBisCO_L_type1.
InterProiIPR020878. RuBisCo_large_chain_AS.
IPR020888. RuBisCO_lsu.
IPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
IPR017444. RuBisCO_lsu_N.
[Graphical view]
PfamiPF00016. RuBisCO_large. 1 hit.
PF02788. RuBisCO_large_N. 1 hit.
[Graphical view]
SUPFAMiSSF51649. SSF51649. 1 hit.
SSF54966. SSF54966. 1 hit.
PROSITEiPS00157. RUBISCO_LARGE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

K9YWC7-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MVQAQQASSG FKAGVQDYAL TYYTPDYTPK DTDILAAFRV TPQPGVPPEE
60 70 80 90 100
AGAAVAAESS TGTWTTVWTD NLTDLDRYKG RCYDIEAVPG EENQYFMFVA
110 120 130 140 150
YPLDLFEEGS VTNMLTSIVG NVFGFKALRA LRLEDMRIPV AYLKTFQGPP
160 170 180 190 200
HGITVERDLL NKYGRPLLGC TIKPKLGLSA KNYGRAVYEC LRGGLDFTKD
210 220 230 240 250
DENINSQPFM RWRDRFLFVA EAVHKAQAET NEIKGHYLNV TAPTCEQMLE
260 270 280 290 300
RAEFVKELDM PILMHDYLTG GFTANTTLAK WCRANGVLMH IHRAMHAVID
310 320 330 340 350
RQKNHGIHFR VLAKCLRMSG GDHLHSGTVV GKLEGERAIT LGFVDQMRED
360 370 380 390 400
HVEEDRSRGN FFTQDWASMG GVFPVASGGI HIWHMPALVD IFGDDSCLQF
410 420 430 440 450
GGGTLGHPWG NAPGATANRV ALEACVQARN EGRSLAREGN EIIKEAARWS
460 470
PELKVASELW KEIKFEYEAV DTL
Length:473
Mass (Da):52,690
Last modified:March 6, 2013 - v1
Checksum:i4087A42D2D3E6FA0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003944 Genomic DNA. Translation: AFZ50428.1.
RefSeqiYP_007171785.1. NC_019780.1.

Genome annotation databases

EnsemblBacteriaiAFZ50428; AFZ50428; Dacsa_1767.
GeneIDi14205673.
KEGGidsl:Dacsa_1767.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003944 Genomic DNA. Translation: AFZ50428.1 .
RefSeqi YP_007171785.1. NC_019780.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AFZ50428 ; AFZ50428 ; Dacsa_1767 .
GeneIDi 14205673.
KEGGi dsl:Dacsa_1767.

Phylogenomic databases

KOi K01601.

Family and domain databases

Gene3Di 3.20.20.110. 1 hit.
3.30.70.150. 1 hit.
HAMAPi MF_01338. RuBisCO_L_type1.
InterProi IPR020878. RuBisCo_large_chain_AS.
IPR020888. RuBisCO_lsu.
IPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
IPR017444. RuBisCO_lsu_N.
[Graphical view ]
Pfami PF00016. RuBisCO_large. 1 hit.
PF02788. RuBisCO_large_N. 1 hit.
[Graphical view ]
SUPFAMi SSF51649. SSF51649. 1 hit.
SSF54966. SSF54966. 1 hit.
PROSITEi PS00157. RUBISCO_LARGE. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: PCC 8305Imported.

Entry informationi

Entry nameiK9YWC7_DACSA
AccessioniPrimary (citable) accession number: K9YWC7
Entry historyi
Integrated into UniProtKB/TrEMBL: March 6, 2013
Last sequence update: March 6, 2013
Last modified: November 26, 2014
This is version 14 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Miscellaneous

The basic functional RuBisCO is composed of a large chain homodimer in a "head-to-tail" conformation. In form I RuBisCO this homodimer is arranged in a barrel-like tetramer with the small subunits forming a tetrameric "cap" on each end of the "barrel".UniRule annotation

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3