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K4CIK0 (K4CIK0_SOLLC) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 11. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length542 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the glycosyl hydrolase 14 family. RuleBase RU004157

Ontologies

Keywords
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processmaltose biosynthetic process

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

polysaccharide catabolic process

Inferred from electronic annotation. Source: InterPro

response to cold

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

   Cellular_componentchloroplast stroma

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

   Molecular_functionbeta-amylase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
K4CIK0 [UniParc].

Last modified November 28, 2012. Version 1.
Checksum: 9C637E6EE0A21127

FASTA54260,890
        10         20         30         40         50         60 
MALTPCSSTS FINKKERKNY RTHDDISSMI CFAKINPPSY NLKAKSYNQE VQFLNPNMEE 

        70         80         90        100        110        120 
KEKFHMLTSG THSNNSSSTK VPVFVMLPLD TISIGGNMNK PRAMNASLMA LKGAGVEGVM 

       130        140        150        160        170        180 
VDCWWGLVEK DGPLKYNWEG YDELVKMVQA NGLKLQVVMS FHQCGGNVGD SCSIPLPPWV 

       190        200        210        220        230        240 
LEEISKNPDI VYTDRSGRRN PEYISLGCDQ LPVLRGRTPI QVYTDYMRSF REKFKNYLGD 

       250        260        270        280        290        300 
VIVEIQVGMG PCGELRYPSY PESNGTWRFP GIGEFQCYDK YMKASLAASA HAMGKESWGR 

       310        320        330        340        350        360 
GGPHDSGQYN QFPEETGFFK KDGTWNSEYG QFFLEWYSRK LLEHGDNILA SAEGIFKGTG 

       370        380        390        400        410        420 
CKLSGKVAGI HWHYNTRSHA AELTAGYYNT RNKDGYLPIA RMFAKRGVVF NFTCMEMRDG 

       430        440        450        460        470        480 
EQPHSANCSP EGLVRQVKNA TRNVGVELAG ENALERYDGG GYAQVLSTSR ADSGNGLSAF 

       490        500        510        520        530        540 
TYLRLNKRLF EPENWRNLVE FVKNMSEGGS TRLPECDSSR TDLYVRFVKQ THAKRTTEVA 


VV 

« Hide

References

« Hide 'large scale' references
[1]"A deep-coverage tomato BAC library and prospects toward development of an STC framework for genome sequencing."
Budiman M.A., Mao L., Wood T.C., Wing R.A.
Genome Res. 10:129-136(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Heinz 1706 EnsemblPlants Solyc08g007130.2.1.
[2]"Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments."
Wang Y., van der Hoeven R.S., Nielsen R., Mueller L.A., Tanksley S.D.
Theor. Appl. Genet. 112:72-84(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Heinz 1706 EnsemblPlants Solyc08g007130.2.1.
[3]EnsemblPlants
Submitted (OCT-2012) to UniProtKB
Cited for: IDENTIFICATION.
Strain: cv. Heinz 1706 EnsemblPlants Solyc08g007130.2.1.

Cross-references

Sequence databases

RefSeqXP_004244551.1. XM_004244503.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsSolyc08g007130.2.1; Solyc08g007130.2.1; Solyc08g007130.2.
GeneID101259175.
KEGGsly:101259175.

Phylogenomic databases

KOK01177.
OMAEHANCSP.

Family and domain databases

Gene3D3.20.20.80. 1 hit.
InterProIPR001554. Glyco_hydro_14.
IPR018238. Glyco_hydro_14_CS.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PfamPF01373. Glyco_hydro_14. 1 hit.
[Graphical view]
PRINTSPR00750. BETAAMYLASE.
SUPFAMSSF51445. SSF51445. 1 hit.
PROSITEPS00506. BETA_AMYLASE_1. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameK4CIK0_SOLLC
AccessionPrimary (citable) accession number: K4CIK0
Entry history
Integrated into UniProtKB/TrEMBL: November 28, 2012
Last sequence update: November 28, 2012
Last modified: May 14, 2014
This is version 11 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)