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Protein

Alpha-amylase

Gene

SETIT_017283mg

Organism
Setaria italica (Foxtail millet) (Panicum italicum)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units.UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei203 – 2031NucleophileUniRule annotation
Active sitei228 – 2281Proton donorUniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseUniRule annotation, Hydrolase

Keywords - Biological processi

Carbohydrate metabolismUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Alpha-amylaseUniRule annotation (EC:3.2.1.1UniRule annotation)
Gene namesi
ORF Names:SETIT_017283mgImported
OrganismiSetaria italica (Foxtail millet) (Panicum italicum)Imported
Taxonomic identifieri4555 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaePACMAD cladePanicoideaePanicodaePaniceaeCenchrinaeSetaria
Proteomesi
  • UP000004995 Componenti: Chromosome I

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2424Sequence analysisAdd
BLAST
Chaini25 – 427403Alpha-amylaseSequence analysisPRO_5007678945Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi4555.Si017283m.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini25 – 365341AamyInterPro annotationAdd
BLAST
Domaini366 – 42661Alpha-amyl_C2InterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the glycosyl hydrolase 13 family.UniRule annotation

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

eggNOGiKOG0471. Eukaryota.
COG0366. LUCA.
InParanoidiK3YSN8.
KOiK01176.
OMAiGEQGYMP.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR012850. A-amylase_bs_C.
IPR013775. A-amylase_pln.
IPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013780. Glyco_hydro_b.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF07821. Alpha-amyl_C2. 1 hit.
PF00128. Alpha-amylase. 1 hit.
[Graphical view]
PIRSFiPIRSF001028. Alph-amls_plant. 1 hit.
PRINTSiPR00110. ALPHAAMYLASE.
SMARTiSM00642. Aamy. 1 hit.
SM00810. Alpha-amyl_C2. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.

Sequencei

Sequence statusi: Complete.

K3YSN8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASKGMLLAL FIALLGLSSN SAAGQVLFQG FNWESWKQNG GWYNFLMGKV
60 70 80 90 100
DDIAEAGITH VWLPPASHSL AEQGYLPGRL YDLDASRYGN EAQLKSLIEA
110 120 130 140 150
FHDKGVKVIA DIVINHRTAE HQDGRGIYCM FEGGTPDSRL DWGPHMICSD
160 170 180 190 200
DRAYSDGTGN PDTGADFGGA PDIDHLNPRV QRELIGWLNW LKTDIGFDAW
210 220 230 240 250
RLDFAKGYSA DVAKVYIDNT EPCFAVAEIW TSLAYGGDGK PYYDQNAHRQ
260 270 280 290 300
ELVNWVDRVG RSGPATTFDF TTKGILNVAV DGELWRLRGA DGKAPGLIGW
310 320 330 340 350
WPAKAVTFID NHDTGSTQHM WPFPADKVMQ GYAYILTHPG SPMIFYDHFF
360 370 380 390 400
DWGLKNEIAH LVSIRDRHGI QPDSELHIIE ADADLYLAEI DGKVIVKIGS
410 420
RFDCEHLIPE GFHVTAHGDG YAVWEKI
Length:427
Mass (Da):47,500
Last modified:November 28, 2012 - v1
Checksum:iA9EE9EA4A6D0904B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM003528 Genomic DNA. Translation: KQL31646.1.
RefSeqiXP_004954023.1. XM_004953966.1.

Genome annotation databases

EnsemblPlantsiSi017283m; Si017283m; Si017283m.g.
GeneIDi101776395.
GrameneiSi017283m; Si017283m; Si017283m.g.
KEGGisita:101776395.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM003528 Genomic DNA. Translation: KQL31646.1.
RefSeqiXP_004954023.1. XM_004953966.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi4555.Si017283m.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiSi017283m; Si017283m; Si017283m.g.
GeneIDi101776395.
GrameneiSi017283m; Si017283m; Si017283m.g.
KEGGisita:101776395.

Phylogenomic databases

eggNOGiKOG0471. Eukaryota.
COG0366. LUCA.
InParanoidiK3YSN8.
KOiK01176.
OMAiGEQGYMP.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR012850. A-amylase_bs_C.
IPR013775. A-amylase_pln.
IPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013780. Glyco_hydro_b.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF07821. Alpha-amyl_C2. 1 hit.
PF00128. Alpha-amylase. 1 hit.
[Graphical view]
PIRSFiPIRSF001028. Alph-amls_plant. 1 hit.
PRINTSiPR00110. ALPHAAMYLASE.
SMARTiSM00642. Aamy. 1 hit.
SM00810. Alpha-amyl_C2. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Yugu1Imported and Yugu1Imported.
  2. EnsemblPlants
    Submitted (OCT-2012) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Yugu1Imported.
  3. Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.
    Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: Yugu1Imported.

Entry informationi

Entry nameiK3YSN8_SETIT
AccessioniPrimary (citable) accession number: K3YSN8
Entry historyi
Integrated into UniProtKB/TrEMBL: November 28, 2012
Last sequence update: November 28, 2012
Last modified: July 6, 2016
This is version 23 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.