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Protein

Alpha-amylase

Gene

SETIT_013789mg

Organism
Setaria italica (Foxtail millet) (Panicum italicum)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units.UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei200 – 2001NucleophileUniRule annotation
Active sitei225 – 2251Proton donorUniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseUniRule annotation, Hydrolase

Keywords - Biological processi

Carbohydrate metabolismUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Alpha-amylaseUniRule annotation (EC:3.2.1.1UniRule annotation)
Gene namesi
ORF Names:SETIT_013789mgImported
OrganismiSetaria italica (Foxtail millet) (Panicum italicum)Imported
Taxonomic identifieri4555 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaePACMAD cladePanicoideaePanicodaePaniceaeCenchrinaeSetaria
Proteomesi
  • UP000004995 Componenti: Chromosome VI

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2121Sequence analysisAdd
BLAST
Chaini22 – 432411Alpha-amylaseSequence analysisPRO_5007678628Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi4555.Si013789m.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini22 – 360339AamyInterPro annotationAdd
BLAST
Domaini361 – 42161Alpha-amyl_C2InterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the glycosyl hydrolase 13 family.UniRule annotation

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

eggNOGiKOG0471. Eukaryota.
COG0366. LUCA.
InParanoidiK3YHS0.
KOiK01176.
OMAiDFHPAAH.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR012850. A-amylase_bs_C.
IPR013775. A-amylase_pln.
IPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013780. Glyco_hydro_b.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF07821. Alpha-amyl_C2. 1 hit.
PF00128. Alpha-amylase. 1 hit.
[Graphical view]
PIRSFiPIRSF001028. Alph-amls_plant. 1 hit.
PRINTSiPR00110. ALPHAAMYLASE.
SMARTiSM00642. Aamy. 1 hit.
SM00810. Alpha-amyl_C2. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.

Sequencei

Sequence statusi: Complete.

K3YHS0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKHSSSLGLL FLLALCSLVQ AQVLFQGFNW ESCKKQGGWY NSLKAKVDDI
60 70 80 90 100
AKAGVTHVWL PPPSHSVSPQ GYMPGRLYDL DASKYGTAAE LKSLIAAFHR
110 120 130 140 150
RGIQCVADIV INHRCADKKD ARGVYCIFEG GTPDERLDWG PGMICSDDTQ
160 170 180 190 200
YSDGTGHRDT GEGFAAAPDI DHLNARVQRE LSAWLNWLKS DVGFDGWRLD
210 220 230 240 250
FAKGYSPAIA KMYVKNTRPS FVVAEIWNSL SYNGDGKPSP NQDQRRQELV
260 270 280 290 300
NWVQAVGKPA MAFDFTTKGL LQAGVQGELW RLRDSSGKAA GLIGWTPEKA
310 320 330 340 350
VTFIDNHDTG STQKLWPFPS DKVMQGYAYI LTHPGVPCIF YDHMFDWNLK
360 370 380 390 400
QEISTLTAIR ARNGIHAGSK LRILLADDDA YVAVVDEKVM VKIGTRYDVG
410 420 430
NVIPSDFHPA AHGKDYCVWE KGTLRVPAGL HL
Length:432
Mass (Da):47,862
Last modified:November 28, 2012 - v1
Checksum:i9433ECD486C2FF65
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM003533 Genomic DNA. Translation: KQL02169.1.
RefSeqiXP_004973671.1. XM_004973614.1.

Genome annotation databases

EnsemblPlantsiSi013789m; Si013789m; Si013789m.g.
GeneIDi101767641.
GrameneiSi013789m; Si013789m; Si013789m.g.
KEGGisita:101767641.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM003533 Genomic DNA. Translation: KQL02169.1.
RefSeqiXP_004973671.1. XM_004973614.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi4555.Si013789m.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiSi013789m; Si013789m; Si013789m.g.
GeneIDi101767641.
GrameneiSi013789m; Si013789m; Si013789m.g.
KEGGisita:101767641.

Phylogenomic databases

eggNOGiKOG0471. Eukaryota.
COG0366. LUCA.
InParanoidiK3YHS0.
KOiK01176.
OMAiDFHPAAH.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR012850. A-amylase_bs_C.
IPR013775. A-amylase_pln.
IPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013780. Glyco_hydro_b.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF07821. Alpha-amyl_C2. 1 hit.
PF00128. Alpha-amylase. 1 hit.
[Graphical view]
PIRSFiPIRSF001028. Alph-amls_plant. 1 hit.
PRINTSiPR00110. ALPHAAMYLASE.
SMARTiSM00642. Aamy. 1 hit.
SM00810. Alpha-amyl_C2. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Yugu1Imported and Yugu1Imported.
  2. EnsemblPlants
    Submitted (OCT-2012) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Yugu1Imported.
  3. Cajimat M.N.B., Milazzo M.L., Fulhorst C.F.
    Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: Yugu1Imported.

Entry informationi

Entry nameiK3YHS0_SETIT
AccessioniPrimary (citable) accession number: K3YHS0
Entry historyi
Integrated into UniProtKB/TrEMBL: November 28, 2012
Last sequence update: November 28, 2012
Last modified: July 6, 2016
This is version 23 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.