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Protein
Submitted name:

DNA polymerase LigD ligase region

Gene

BN406_00784

Organism
Sinorhizobium meliloti Rm41
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase LigD ligase regionImported
Gene namesi
ORF Names:BN406_00784Imported
OrganismiSinorhizobium meliloti Rm41Imported
Taxonomic identifieri1230587 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
ProteomesiUP000006184: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

K0PE95-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MFSQPKESIR LFAGLCVNGL MTKASSKKPR YTPPIDPMPA RVDPCLAALV
60 70 80 90 100
TKPPKGPDWA YEVKWDGYRI AVHIEPGRVR ILTRGGYDWT ERFPTIVDDA
110 120 130 140 150
RRLAVKTAIL DGEAVVLDDL GRSDFGMLQR ALGRLPSAVE AGAIVFYAFD
160 170 180 190 200
LLYLDGRDLR RLPLRERRRL LEPLVAGREG AVRLSEEVQA DGNEFFRVAC
210 220 230 240 250
QHGLEGIIAK HIEKPYRSGR GEWWQKITCK RRDSFVVVGF EPSTVPSHLG
260 270 280 290 300
RLLLAARKGD DLVYVGGCGT GWSHELSREL RKLLEGMVTK APAVALRRKG
310 320 330 340
AVFVDPVLAA EVEYRAWTDD WKLRHASFKG VRPREDEAAV FELP
Length:344
Mass (Da):38,615
Last modified:November 28, 2012 - v1
Checksum:i228EBEA239915B43
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
HE995405 Genomic DNA. Translation: CCM66829.1.
RefSeqiWP_015007422.1. NC_018700.1.
YP_006839655.1. NC_018700.1.

Genome annotation databases

EnsemblBacteriaiCCM66829; CCM66829; BN406_00784.
GeneIDi13775381.
KEGGismi:BN406_00784.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
HE995405 Genomic DNA. Translation: CCM66829.1.
RefSeqiWP_015007422.1. NC_018700.1.
YP_006839655.1. NC_018700.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCCM66829; CCM66829; BN406_00784.
GeneIDi13775381.
KEGGismi:BN406_00784.

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome Sequence of Sinorhizobium meliloti Rm41."
    Weidner S., Baumgarth B., Goettfert M., Jaenicke S., Puehler A., Schneiker-Bekel S., Serrania J., Szczepanowski R., Becker A.
    Submitted (SEP-2012) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: Rm41Imported.

Entry informationi

Entry nameiK0PE95_RHIML
AccessioniPrimary (citable) accession number: K0PE95
Entry historyi
Integrated into UniProtKB/TrEMBL: November 28, 2012
Last sequence update: November 28, 2012
Last modified: January 7, 2015
This is version 11 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.