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K0MIC1 (K0MIC1_BORBM) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 8. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:BN115_2282 EMBL CCJ59038.1
OrganismBordetella bronchiseptica (strain MO149) [Complete proteome] [HAMAP] EMBL CCJ59038.1
Taxonomic identifier1208658 [NCBI]
Taxonomic lineageBacteriaProteobacteriaBetaproteobacteriaBurkholderialesAlcaligenaceaeBordetella

Protein attributes

Sequence length1113 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
K0MIC1 [UniParc].

Last modified November 28, 2012. Version 1.
Checksum: 39329CC31ADD341D

FASTA1,113124,120
        10         20         30         40         50         60 
MPATHPAPDP LWYKDAVIYQ LHVKSFFDAN DDGVGDFAGL LAKLDYIVEL GVNTIWLLPF 

        70         80         90        100        110        120 
YPSPRRDDGY DIADYRGVHP DYGSLADARR LVRAAHARGL RVITELVINH TSDQHPWFQR 

       130        140        150        160        170        180 
ARAARPGSAH RAYYVWSDDD KAYAGTRIIF CDTEKSNWTW DPVAGAYFWH RFYSHQPDLN 

       190        200        210        220        230        240 
YDNPQVLREV LGAMRYWLDM GVDGLRLDAV PYLVEREGTN NENLPETHAV LRRIRRVIDS 

       250        260        270        280        290        300 
EYPGRMLLAE ANQWPEDAQE YFGAGDECHM AFHFPLMPRM YMAIAQEDRL PVTDIIRQTP 

       310        320        330        340        350        360 
SIAPQCQWAI FLRNHDELTL EMVTSRERDY LWNVYAAEPR ARINLGIRRR LAPLLERDRR 

       370        380        390        400        410        420 
RIELMNSLLL SMPGTPVLYY GDELGMGDNI HLGDRDGVRT PMQWSPDRNG GFSRADPERL 

       430        440        450        460        470        480 
PLPLLMGPLY GYEAVNVEAQ QRDPHSLLNW TRRMLAKRRQ SHVFGRGELS FLYPGNRKIL 

       490        500        510        520        530        540 
AYLRTWEDTV VLCVANLSQA AQPVELHLSE YAGRVPVEML GGTAFPQIGE LPYLLTLPPF 

       550        560        570        580        590        600 
GFYWLDLSAD AAPPAWHSEL PPQMPESITL VSRGAGAALR LTEASRRQLE ADVLPAYLQR 

       610        620        630        640        650        660 
QRWYAARRKP GVMRLAYSVP LNDGVESYYE AEIEVSDDGP PRRFHTPVAL AWLDDTAAQY 

       670        680        690        700        710        720 
PLARVRRGAQ LGTLTDASLQ PGYARVLLAA LAAGRDIQAG GEPAVRLRFL PEPGLAELAL 

       730        740        750        760        770        780 
RDDSEVRALS ADQSNSSLLV GERVVLKLLR ELHAGPHPEA EMTRYLTQAG YAHTPALLGE 

       790        800        810        820        830        840 
VVREHGDQAP HTLALAHAYV VNEGDAWNWT VAYLKRTVDA AMLTGASADD YQQELAGYEA 

       850        860        870        880        890        900 
LAGTIGQRLA QMHSVLARAG ELPDFAPRPA SERDAALAGE RAVAQLDRAL QALRACESGL 

       910        920        930        940        950        960 
AAASHACAQW LFEHRDRLAA HIMTLAQAET GALRIRVHGD FHLGQILVAQ TDAYLIDFEG 

       970        980        990       1000       1010       1020 
EPARPMAERR QLSSPFKDVA GILRSFDYAV AELSRDDPLG GAPRDFNTGV AEPADPASAP 

      1030       1040       1050       1060       1070       1080 
RETREALLAR FRQRAGAALL ASYGNAIDPA LALPPERAQA LTCLYLLEKA AYEICYESAY 

      1090       1100       1110 
RPERLPVPIH GLAETARAAL LAAAVDHDEG PAP 

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References

[1]"Comparative genomics of the classical Bordetella subspecies: the evolution and exchange of virulence-associated diversity amongst closely related pathogens."
Park J., Zhang Y., Buboltz A.M., Zhang X., Schuster S.C., Ahuja U., Liu M., Miller J.F., Sebaihia M., Bentley S.D., Parkhill J., Harvill E.T.
BMC Genomics 13:545-545(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: MO149 EMBL CCJ59038.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
HE965807 Genomic DNA. Translation: CCJ59038.1.
RefSeqYP_006900519.1. NC_018829.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCCJ59038; CCJ59038; BN115_2282.
GeneID13894876.
KEGGbbm:BN115_2282.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK05343.
OMAGTRIIFT.

Family and domain databases

Gene3D2.60.40.1180. 1 hit.
3.20.20.80. 3 hits.
InterProIPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR011009. Kinase-like_dom.
IPR012810. TreS/a-amylase_N.
IPR012811. TreS_maltokin_C_dom.
[Graphical view]
PANTHERPTHR10357. PTHR10357. 1 hit.
PfamPF00128. Alpha-amylase. 1 hit.
[Graphical view]
SMARTSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMSSF51445. SSF51445. 2 hits.
SSF56112. SSF56112. 1 hit.
TIGRFAMsTIGR02457. TreS_Cterm. 1 hit.
TIGR02456. treS_nterm. 1 hit.
ProtoNetSearch...

Entry information

Entry nameK0MIC1_BORBM
AccessionPrimary (citable) accession number: K0MIC1
Entry history
Integrated into UniProtKB/TrEMBL: November 28, 2012
Last sequence update: November 28, 2012
Last modified: May 14, 2014
This is version 8 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)