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K0MFB9 (K0MFB9_BORPB) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 5. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Alanine racemase RuleBase RU000608
EC=5.1.1.1 RuleBase RU000608
Gene names
Name:alr EMBL CCJ48739.1
Ordered Locus Names:BN117_1406 EMBL CCJ48739.1
OrganismBordetella parapertussis (strain Bpp5) [Complete proteome] [HAMAP] EMBL CCJ48739.1
Taxonomic identifier1208660 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Alcaligenaceae › Bordetella ›

Protein attributes

Sequence length387 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

L-alanine = D-alanine. SAAS SAAS020622 RuleBase RU000608

Cofactor

Pyridoxal phosphate By similarity. SAAS SAAS020622 RuleBase RU000608

Pathway

Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1. SAAS SAAS020622

Sequence similarities

Belongs to the alanine racemase family. RuleBase RU004188

Ontologies

Keywords
   LigandPyridoxal phosphate SAAS SAAS020622 RuleBase RU000608
   Molecular functionIsomerase SAAS SAAS020622 RuleBase RU000608 EMBL CCJ48739.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processD-alanine biosynthetic process

Inferred from electronic annotation. Source: UniProtKB-UniPathway

   Molecular_functionalanine racemase activity

Inferred from electronic annotation. Source: EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
K0MFB9 [UniParc].

Last modified November 28, 2012. Version 1.
Checksum: 706F846FF0EF2A75

FASTA38741,465
        10         20         30         40         50         60 
MPLASDPFDA PIPGLHACID PIAVAHNLEV LRQRLGVGVD GPRIWATVKA DAYGHGLHNV 

        70         80         90        100        110        120 
LPGLRAADGI AVRHLHEAHQ CRRVGWRGPI MVYAGLTHER EAALLTLQQL HLVITDMTQL 

       130        140        150        160        170        180 
EWLPGKPLYA CAPWVWLRYI GATRLGGLDA GEYRRAYARC RELQQHGALR GVGHLNHYAN 

       190        200        210        220        230        240 
AASVGDLERE HADFEACIRG LPGPVSTCNS AASCVMPTMA ARTDWVRPGL ALYGVSPIPD 

       250        260        270        280        290        300 
RVGRDLGLRP AMTLRSTLCA TQKLPAGASV GYGCAFVADQ PMALGLVRCG YGDGYPHNPR 

       310        320        330        340        350        360 
ASFPVQVDGV LTRTVGRISM DLMAVDLRPI PAAARGAPVV LWGSPQLPVE HIAHAADTIA 

       370        380 
AELLTGLTAR VPLMRADHAA LLRGPLA

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References

[1]"Comparative genomics of the classical Bordetella subspecies: the evolution and exchange of virulence-associated diversity amongst closely related pathogens."
Park J., Zhang Y., Buboltz A.M., Zhang X., Schuster S.C., Ahuja U., Liu M., Miller J.F., Sebaihia M., Bentley S.D., Parkhill J., Harvill E.T.
BMC Genomics 13:545-545(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Bpp5 EMBL CCJ48739.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		HE965803 Genomic DNA. Translation: CCJ48739.1.
RefSeqYP_006895388.1. NC_018828.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCCJ48739; CCJ48739; BN117_1406.
GeneID13889442.
KEGGbpar:BN117_1406.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01775.

Enzyme and pathway databases

UniPathwayUPA00042; UER00497.

Family and domain databases

Gene3D2.40.37.10. 1 hit.
HAMAPMF_01201. Ala_racemase.
InterProIPR000821. Ala_racemase.
IPR009006. Ala_racemase/Decarboxylase_C.
IPR011079. Ala_racemase_C.
IPR001608. Ala_racemase_N.
IPR020622. Ala_racemase_pyridoxalP-BS.
[Graphical view]
PfamPF00842. Ala_racemase_C. 1 hit.
PF01168. Ala_racemase_N. 1 hit.
[Graphical view]
PRINTSPR00992. ALARACEMASE.
SMARTSM01005. Ala_racemase_C. 1 hit.
[Graphical view]
SUPFAMSSF50621. Racem_decarbox_C. 1 hit.
TIGRFAMsTIGR00492. alr. 1 hit.
PROSITEPS00395. ALANINE_RACEMASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameK0MFB9_BORPB
AccessionPrimary (citable) accession number: K0MFB9
Entry history
Integrated into UniProtKB/TrEMBL: November 28, 2012
Last sequence update: November 28, 2012
Last modified: April 3, 2013
This is version 5 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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