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Protein

Superoxide dismutase

Gene

sodA

Organism
Amphibacillus xylanus (strain ATCC 51415 / DSM 6626 / JCM 7361 / LMG 17667 / NBRC 15112 / Ep01)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Destroys radicals which are normally produced within the cells and which are toxic to biological systems.UniRule annotation

Catalytic activityi

2 superoxide + 2 H+ = O2 + H2O2.UniRule annotation

GO - Molecular functioni

  1. metal ion binding Source: InterPro
  2. superoxide dismutase activity Source: UniProtKB-EC
Complete GO annotation...

Keywords - Molecular functioni

OxidoreductaseUniRule annotationImported

Names & Taxonomyi

Protein namesi
Recommended name:
Superoxide dismutaseUniRule annotation (EC:1.15.1.1UniRule annotation)
Gene namesi
Name:sodAImported
Ordered Locus Names:AXY_11340Imported
OrganismiAmphibacillus xylanus (strain ATCC 51415 / DSM 6626 / JCM 7361 / LMG 17667 / NBRC 15112 / Ep01)Imported
Taxonomic identifieri698758 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeAmphibacillus
ProteomesiUP000006294 Componenti: Chromosome

Structurei

3D structure databases

ProteinModelPortaliK0J3U6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the iron/manganese superoxide dismutase family.UniRule annotation

Phylogenomic databases

KOiK04564.

Family and domain databases

InterProiIPR001189. Mn/Fe_SOD.
IPR019833. Mn/Fe_SOD_BS.
IPR019832. Mn/Fe_SOD_C.
IPR019831. Mn/Fe_SOD_N.
[Graphical view]
PANTHERiPTHR11404. PTHR11404. 1 hit.
PfamiPF02777. Sod_Fe_C. 1 hit.
PF00081. Sod_Fe_N. 1 hit.
[Graphical view]
PIRSFiPIRSF000349. SODismutase. 1 hit.
PRINTSiPR01703. MNSODISMTASE.
SUPFAMiSSF46609. SSF46609. 1 hit.
SSF54719. SSF54719. 1 hit.
PROSITEiPS00088. SOD_MN. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

K0J3U6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGKFELPELP YAYDALEPHI DQETMSIHHT RHHNTYVANL NGALEGRSEL
60 70 80 90 100
QDKSLEELLA NIDNLPKEIQ TAVRNNGGGH ANHSLFWKLM SPNGGGSPQG
110 120 130 140 150
SLAEAIDAKF GSFDKFKEEF AAAATGRFGS GWAWLVVDNG ELAITSTPNQ
160 170 180 190 200
DTPLMEGKTP ILGIDVWEHA YYLKYQNKRP DYISAFWNVV DWDKVAELYQ

EAK
Length:203
Mass (Da):22,707
Last modified:November 28, 2012 - v1
Checksum:i0480C17F99DB9607
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP012050 Genomic DNA. Translation: BAM47266.1.
RefSeqiYP_006845028.1. NC_018704.1.

Genome annotation databases

EnsemblBacteriaiBAM47266; BAM47266; AXY_11340.
KEGGiaxl:AXY_11340.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP012050 Genomic DNA. Translation: BAM47266.1.
RefSeqiYP_006845028.1. NC_018704.1.

3D structure databases

ProteinModelPortaliK0J3U6.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAM47266; BAM47266; AXY_11340.
KEGGiaxl:AXY_11340.

Phylogenomic databases

KOiK04564.

Family and domain databases

InterProiIPR001189. Mn/Fe_SOD.
IPR019833. Mn/Fe_SOD_BS.
IPR019832. Mn/Fe_SOD_C.
IPR019831. Mn/Fe_SOD_N.
[Graphical view]
PANTHERiPTHR11404. PTHR11404. 1 hit.
PfamiPF02777. Sod_Fe_C. 1 hit.
PF00081. Sod_Fe_N. 1 hit.
[Graphical view]
PIRSFiPIRSF000349. SODismutase. 1 hit.
PRINTSiPR01703. MNSODISMTASE.
SUPFAMiSSF46609. SSF46609. 1 hit.
SSF54719. SSF54719. 1 hit.
PROSITEiPS00088. SOD_MN. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Whole genome sequence of Amphibacillus xylinus NBRC 15112."
    Nakazawa H., Katano Y., Nakamura S., Sasagawa M., Fukada J., Arai T., Sasakura N., Mochizuki D., Hosoyama A., Harada K., Horikawa H., Kato Y., Harada T., Sasaki K., Sekiguchi M., Hodoyama M., Nishiko R., Narita H.
    , Hanamaki A., Hata C., Konno Y., Niimura Y., Yamazaki S., Fujita N.
    Submitted (DEC-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 51415 / DSM 6626 / JCM 7361 / LMG 17667 / NBRC 15112 / Ep01Imported.

Entry informationi

Entry nameiK0J3U6_AMPXN
AccessioniPrimary (citable) accession number: K0J3U6
Entry historyi
Integrated into UniProtKB/TrEMBL: November 28, 2012
Last sequence update: November 28, 2012
Last modified: April 1, 2015
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.