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Protein
Submitted name:

DNA ligase

Gene

C380_14890

Organism
Acidovorax sp. KKS102
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligaseImported (EC:6.5.1.1Imported)
Gene namesi
ORF Names:C380_14890Imported
OrganismiAcidovorax sp. KKS102Imported
Taxonomic identifieri358220 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesComamonadaceaeAcidovorax
ProteomesiUP000006306: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK10747.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.

Sequencei

Sequence statusi: Complete.

K0I2P5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLRRHCLAWL GLAPLAALTT PQAWAADAPA LLLANVYRPG MRLADYWVSE
60 70 80 90 100
KYDGVRGYWD GHTLRTRGGE TVTAPAWFTA GWPDTPMDGE LWAGRGRFSH
110 120 130 140 150
AQSTVRQQQP DDAAWREMRF MVFDLPAHGG TFDQRLPELN KLVESLDQPW
160 170 180 190 200
VQAVPQQRVA SDAALQKLLL RTVRAGGEGL MLHRGASMYR AGRSDDLIKV
210 220 230 240 250
KTHEDAEAKV VAHLPGQGRH AGRLGALVVE MPSGQRFRLG AGLTDAERDH
260 270 280
PPPVGSWVTY RFRGTHDSGV PRFASFVRVR DDMPPTR
Length:287
Mass (Da):31,918
Last modified:November 28, 2012 - v1
Checksum:iCC87F811512A9CC2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003872 Genomic DNA. Translation: AFU46675.1.
RefSeqiWP_015014681.1. NC_018708.1.
YP_006855313.1. NC_018708.1.

Genome annotation databases

EnsemblBacteriaiAFU46675; AFU46675; C380_14890.
GeneIDi13786503.
KEGGiack:C380_14890.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003872 Genomic DNA. Translation: AFU46675.1.
RefSeqiWP_015014681.1. NC_018708.1.
YP_006855313.1. NC_018708.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAFU46675; AFU46675; C380_14890.
GeneIDi13786503.
KEGGiack:C380_14890.

Phylogenomic databases

KOiK10747.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Complete Genome Sequence of Acidovorax sp. Strain KKS102, a Polychlorinated-Biphenyl Degrader."
    Ohtsubo Y., Maruyama F., Mitsui H., Nagata Y., Tsuda M.
    J. Bacteriol. 194:6970-6971(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: KKS102Imported.

Entry informationi

Entry nameiK0I2P5_9BURK
AccessioniPrimary (citable) accession number: K0I2P5
Entry historyi
Integrated into UniProtKB/TrEMBL: November 28, 2012
Last sequence update: November 28, 2012
Last modified: March 4, 2015
This is version 13 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.