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K0EXY8 (K0EXY8_9NOCA) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 8. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=6.5.1.1 EMBL AFU01924.1
Gene names
Name:ligC EMBL AFU01924.1
ORF Names:O3I_019825 EMBL AFU01924.1
OrganismNocardia brasiliensis ATCC 700358 [Complete proteome] EMBL AFU01924.1
Taxonomic identifier1133849 [NCBI]
Taxonomic lineageBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeNocardiaceaeNocardia

Protein attributes

Sequence length349 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL AFU01924.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
K0EXY8 [UniParc].

Last modified November 28, 2012. Version 1.
Checksum: A102DB9B88369451

FASTA34938,938
        10         20         30         40         50         60 
MLAKTAPGVP REPGLSYEPK WDGFRCIVFR DGAEVELGSR NDRPLTRYFP EVAELLRQAL 

        70         80         90        100        110        120 
PDRCVVDGEI VVVTDQGLDF DTLQNRLHPA ASRVNKLAVE TPASFVAFDL LALGDRDLTE 

       130        140        150        160        170        180 
EPFAERRRLL ETILDTKPAR VHLTPITQDP DVAEDWFTRF EGAGFDGVMV KADGLAYLQD 

       190        200        210        220        230        240 
KRVMLKVKHE RTADCVVAGF RWHKDGEGVG SLLLGLFDDE GNLHHVGVAS SFTAARRKEL 

       250        260        270        280        290        300 
VGELAPLREN ALENHPWREW ADAAAQARAD GKMPGGVSRW TGGKDLSWEA LRTELVAEVR 

       310        320        330        340 
YEHVQSGRLR HGGRLVRFRT DRTPESCTYA QLDEAPPAEL SEIFSEAKS 

« Hide

References

[1]"Complete genome sequence of Nocardia brasiliensis HUJEG-1."
Vera-Cabrera L., Ortiz-Lopez R., Elizondo-Gonzalez R., Perez-Maya A.A., Ocampo-Candiani J.
J. Bacteriol. 194:2761-2762(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: HUJEG-1 EMBL AFU01924.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP003876 Genomic DNA. Translation: AFU01924.1.
RefSeqYP_006808898.1. NC_018681.1.

3D structure databases

ProteinModelPortalK0EXY8.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAFU01924; AFU01924; O3I_019825.
GeneID13726992.
KEGGnbr:O3I_019825.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameK0EXY8_9NOCA
AccessionPrimary (citable) accession number: K0EXY8
Entry history
Integrated into UniProtKB/TrEMBL: November 28, 2012
Last sequence update: November 28, 2012
Last modified: April 16, 2014
This is version 8 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)