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Protein
Submitted name:

DNA ligase

Gene

AMBAS45_18105

Organism
Alteromonas macleodii (strain Balearic Sea AD45)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligaseImported
Gene namesi
Ordered Locus Names:AMBAS45_18105Imported
OrganismiAlteromonas macleodii (strain Balearic Sea AD45)Imported
Taxonomic identifieri1004787 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesAlteromonadaceaeAlteromonas
ProteomesiUP000006308: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK10747.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

K0EK58-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEEFSNLLEQ LYYTAGTKAK AQLIADYIAN TPDPDRGWAI AAMAGTLRFD
60 70 80 90 100
FFKRNTVKKL ITEHTDPALF AMSYDYVGEV SETVAHLWPY SEPTDNLPSL
110 120 130 140 150
TEVVETFASV SKQKVSETLA NYLTIMTPAQ RWALLKLGTR GLRIGVSARS
160 170 180 190 200
IKQILADYGN KDIKEIETLW HAVTPPYSEM LAWLEGDADK PNVENAVTFH
210 220 230 240 250
PVMLSHPIED SDIDAFEENT WQIENKYDGI RVQLAVKSER SVGNKAAKKN
260 270 280 290 300
TSQSSDDDTP DKALFSRTGD DISHSFPDLL ETVKGNMVLD GELLVIHNVK
310 320 330 340 350
EDAYDAMASQ PNVDTFNALQ QRLNKKKPSK ALQASAPVGL IVYDALVLDG
360 370 380 390 400
EDLTEKTLKE RRHALNEWFN HNKSERLFLS ETLSATSPES LRELHAHVCQ
410 420 430 440 450
NRAVEGLMIK RLDSKYIPGR PKGQWFKWKR DPLVVDAVMM YAQRGHGKRS
460 470 480 490 500
SFYSDYTFGA WEDDQLLPIG KAYSGFTDEE LKKLDNWVRR NAVGRFGPVR
510 520 530 540 550
EVKKDLVLEV AFDAVHPSSR HKSGVALRFP RIHRIRWDKP ATEADTLANV

KALIES
Length:556
Mass (Da):62,772
Last modified:November 28, 2012 - v1
Checksum:i25B333555168CE72
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003873 Genomic DNA. Translation: AFT97078.1.
RefSeqiWP_014980545.1. NC_018679.1.
YP_006804559.1. NC_018679.1.

Genome annotation databases

EnsemblBacteriaiAFT97078; AFT97078; AMBAS45_18105.
GeneIDi13746792.
KEGGiamb:AMBAS45_18105.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003873 Genomic DNA. Translation: AFT97078.1.
RefSeqiWP_014980545.1. NC_018679.1.
YP_006804559.1. NC_018679.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAFT97078; AFT97078; AMBAS45_18105.
GeneIDi13746792.
KEGGiamb:AMBAS45_18105.

Phylogenomic databases

KOiK10747.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genomes of surface isolates of Alteromonas macleodii: the life of a widespread marine opportunistic copiotroph."
    Lopez-Perez M., Gonzaga A., Martin-Cuadrado A.B., Onyshchenko O., Ghavidel A., Ghai R., Rodriguez-Valera F.
    Sci. Rep. 2:696-696(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Balearic Sea AD45Imported.

Entry informationi

Entry nameiK0EK58_ALTMB
AccessioniPrimary (citable) accession number: K0EK58
Entry historyi
Integrated into UniProtKB/TrEMBL: November 28, 2012
Last sequence update: November 28, 2012
Last modified: March 4, 2015
This is version 10 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.