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K0EK58

- K0EK58_ALTMB

UniProt

K0EK58 - K0EK58_ALTMB

Protein
Submitted name:

DNA ligase

Gene

AMBAS45_18105

Organism
Alteromonas macleodii (strain Balearic Sea AD45)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 7 (01 Oct 2014)
      Sequence version 1 (28 Nov 2012)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligaseImported
    Gene namesi
    Ordered Locus Names:AMBAS45_18105Imported
    OrganismiAlteromonas macleodii (strain Balearic Sea AD45)Imported
    Taxonomic identifieri1004787 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesAlteromonadaceaeAlteromonas
    ProteomesiUP000006308: Chromosome

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    K0EK58-1 [UniParc]FASTAAdd to Basket

    « Hide

    MEEFSNLLEQ LYYTAGTKAK AQLIADYIAN TPDPDRGWAI AAMAGTLRFD    50
    FFKRNTVKKL ITEHTDPALF AMSYDYVGEV SETVAHLWPY SEPTDNLPSL 100
    TEVVETFASV SKQKVSETLA NYLTIMTPAQ RWALLKLGTR GLRIGVSARS 150
    IKQILADYGN KDIKEIETLW HAVTPPYSEM LAWLEGDADK PNVENAVTFH 200
    PVMLSHPIED SDIDAFEENT WQIENKYDGI RVQLAVKSER SVGNKAAKKN 250
    TSQSSDDDTP DKALFSRTGD DISHSFPDLL ETVKGNMVLD GELLVIHNVK 300
    EDAYDAMASQ PNVDTFNALQ QRLNKKKPSK ALQASAPVGL IVYDALVLDG 350
    EDLTEKTLKE RRHALNEWFN HNKSERLFLS ETLSATSPES LRELHAHVCQ 400
    NRAVEGLMIK RLDSKYIPGR PKGQWFKWKR DPLVVDAVMM YAQRGHGKRS 450
    SFYSDYTFGA WEDDQLLPIG KAYSGFTDEE LKKLDNWVRR NAVGRFGPVR 500
    EVKKDLVLEV AFDAVHPSSR HKSGVALRFP RIHRIRWDKP ATEADTLANV 550
    KALIES 556
    Length:556
    Mass (Da):62,772
    Last modified:November 28, 2012 - v1
    Checksum:i25B333555168CE72
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003873 Genomic DNA. Translation: AFT97078.1.
    RefSeqiWP_014980545.1. NC_018679.1.
    YP_006804559.1. NC_018679.1.

    Genome annotation databases

    EnsemblBacteriaiAFT97078; AFT97078; AMBAS45_18105.
    GeneIDi13746792.
    KEGGiamb:AMBAS45_18105.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003873 Genomic DNA. Translation: AFT97078.1 .
    RefSeqi WP_014980545.1. NC_018679.1.
    YP_006804559.1. NC_018679.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AFT97078 ; AFT97078 ; AMBAS45_18105 .
    GeneIDi 13746792.
    KEGGi amb:AMBAS45_18105.

    Phylogenomic databases

    KOi K01971.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genomes of surface isolates of Alteromonas macleodii: the life of a widespread marine opportunistic copiotroph."
      Lopez-Perez M., Gonzaga A., Martin-Cuadrado A.B., Onyshchenko O., Ghavidel A., Ghai R., Rodriguez-Valera F.
      Sci. Rep. 2:696-696(2012) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Balearic Sea AD45Imported.

    Entry informationi

    Entry nameiK0EK58_ALTMB
    AccessioniPrimary (citable) accession number: K0EK58
    Entry historyi
    Integrated into UniProtKB/TrEMBL: November 28, 2012
    Last sequence update: November 28, 2012
    Last modified: October 1, 2014
    This is version 7 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3