K0EK58 (K0EK58_ALTMB) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA ligase EMBL AFT97078.1

Gene names

Ordered Locus Names:

AMBAS45_18105 EMBL AFT97078.1

Organism

Alteromonas macleodii (strain Balearic Sea AD45) [Complete proteome] [HAMAP] EMBL AFT97078.1

Taxonomic identifier

1004787 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Alteromonadaceae › Alteromonas › Alteromonas macleodii

Protein attributes

Sequence length	556 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL AFT97078.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	K0EK58 [UniParc]. Last modified November 28, 2012. Version 1. Checksum: 25B333555168CE72	FASTA	556	62,772
	10 20 30 40 50 60 MEEFSNLLEQ LYYTAGTKAK AQLIADYIAN TPDPDRGWAI AAMAGTLRFD FFKRNTVKKL 70 80 90 100 110 120 ITEHTDPALF AMSYDYVGEV SETVAHLWPY SEPTDNLPSL TEVVETFASV SKQKVSETLA 130 140 150 160 170 180 NYLTIMTPAQ RWALLKLGTR GLRIGVSARS IKQILADYGN KDIKEIETLW HAVTPPYSEM 190 200 210 220 230 240 LAWLEGDADK PNVENAVTFH PVMLSHPIED SDIDAFEENT WQIENKYDGI RVQLAVKSER 250 260 270 280 290 300 SVGNKAAKKN TSQSSDDDTP DKALFSRTGD DISHSFPDLL ETVKGNMVLD GELLVIHNVK 310 320 330 340 350 360 EDAYDAMASQ PNVDTFNALQ QRLNKKKPSK ALQASAPVGL IVYDALVLDG EDLTEKTLKE 370 380 390 400 410 420 RRHALNEWFN HNKSERLFLS ETLSATSPES LRELHAHVCQ NRAVEGLMIK RLDSKYIPGR 430 440 450 460 470 480 PKGQWFKWKR DPLVVDAVMM YAQRGHGKRS SFYSDYTFGA WEDDQLLPIG KAYSGFTDEE 490 500 510 520 530 540 LKKLDNWVRR NAVGRFGPVR EVKKDLVLEV AFDAVHPSSR HKSGVALRFP RIHRIRWDKP 550 ATEADTLANV KALIES

References

[1]

"Genomes of surface isolates of Alteromonas macleodii: the life of a widespread marine opportunistic copiotroph." Lopez-Perez M., Gonzaga A., Martin-Cuadrado A.B., Onyshchenko O., Ghavidel A., Ghai R., Rodriguez-Valera F. Sci. Rep. 2:696-696(2012) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Balearic Sea AD45.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP003873 Genomic DNA. Translation: AFT97078.1.
RefSeq	YP_006804559.1. NC_018679.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AFT97078; AFT97078; AMBAS45_18105.
GeneID	13746792.
KEGG	amb:AMBAS45_18105.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K01971.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR026333. ATP_dep_DNA_lig_pp_1105_fam. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR04120. DNA_lig_bact. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

K0EK58_ALTMB

Accession

Primary (citable) accession number: K0EK58

Entry history

Integrated into UniProtKB/TrEMBL:	November 28, 2012
Last sequence update:	November 28, 2012
Last modified:	April 3, 2013
This is version 4 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)