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K0EK58

- K0EK58_ALTMB

UniProt

K0EK58 - K0EK58_ALTMB

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Protein
Submitted name: DNA ligase
Gene
AMBAS45_18105
Organism
Alteromonas macleodii (strain Balearic Sea AD45)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro
Complete GO annotation...

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligaseImported
Gene namesi
Ordered Locus Names:AMBAS45_18105Imported
OrganismiAlteromonas macleodii (strain Balearic Sea AD45)Imported
Taxonomic identifieri1004787 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesAlteromonadaceaeAlteromonas
ProteomesiUP000006308: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

K0EK58-1 [UniParc]FASTAAdd to Basket

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MEEFSNLLEQ LYYTAGTKAK AQLIADYIAN TPDPDRGWAI AAMAGTLRFD    50
FFKRNTVKKL ITEHTDPALF AMSYDYVGEV SETVAHLWPY SEPTDNLPSL 100
TEVVETFASV SKQKVSETLA NYLTIMTPAQ RWALLKLGTR GLRIGVSARS 150
IKQILADYGN KDIKEIETLW HAVTPPYSEM LAWLEGDADK PNVENAVTFH 200
PVMLSHPIED SDIDAFEENT WQIENKYDGI RVQLAVKSER SVGNKAAKKN 250
TSQSSDDDTP DKALFSRTGD DISHSFPDLL ETVKGNMVLD GELLVIHNVK 300
EDAYDAMASQ PNVDTFNALQ QRLNKKKPSK ALQASAPVGL IVYDALVLDG 350
EDLTEKTLKE RRHALNEWFN HNKSERLFLS ETLSATSPES LRELHAHVCQ 400
NRAVEGLMIK RLDSKYIPGR PKGQWFKWKR DPLVVDAVMM YAQRGHGKRS 450
SFYSDYTFGA WEDDQLLPIG KAYSGFTDEE LKKLDNWVRR NAVGRFGPVR 500
EVKKDLVLEV AFDAVHPSSR HKSGVALRFP RIHRIRWDKP ATEADTLANV 550
KALIES 556
Length:556
Mass (Da):62,772
Last modified:November 28, 2012 - v1
Checksum:i25B333555168CE72
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP003873 Genomic DNA. Translation: AFT97078.1.
RefSeqiWP_014980545.1. NC_018679.1.
YP_006804559.1. NC_018679.1.

Genome annotation databases

EnsemblBacteriaiAFT97078; AFT97078; AMBAS45_18105.
GeneIDi13746792.
KEGGiamb:AMBAS45_18105.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP003873 Genomic DNA. Translation: AFT97078.1 .
RefSeqi WP_014980545.1. NC_018679.1.
YP_006804559.1. NC_018679.1.

3D structure databases

ModBasei Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AFT97078 ; AFT97078 ; AMBAS45_18105 .
GeneIDi 13746792.
KEGGi amb:AMBAS45_18105.

Phylogenomic databases

KOi K01971.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Genomes of surface isolates of Alteromonas macleodii: the life of a widespread marine opportunistic copiotroph."
    Lopez-Perez M., Gonzaga A., Martin-Cuadrado A.B., Onyshchenko O., Ghavidel A., Ghai R., Rodriguez-Valera F.
    Sci. Rep. 2:696-696(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Balearic Sea AD45.

Entry informationi

Entry nameiK0EK58_ALTMB
AccessioniPrimary (citable) accession number: K0EK58
Entry historyi
Integrated into UniProtKB/TrEMBL: November 28, 2012
Last sequence update: November 28, 2012
Last modified: September 3, 2014
This is version 6 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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