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Protein
Submitted name:

DNA ligase

Gene

AMBAS45_03390

Organism
Alteromonas macleodii (strain Balearic Sea AD45)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligaseImported (EC:6.5.1.1Imported)
Gene namesi
Ordered Locus Names:AMBAS45_03390Imported
OrganismiAlteromonas macleodii (strain Balearic Sea AD45)Imported
Taxonomic identifieri1004787 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesAlteromonadaceaeAlteromonas
ProteomesiUP000006308 Componenti: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK10747.
OMAiVRGYWDG.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

K0EC25-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRNFLTAVYV LSITAIANVN ANYMLDTVEG LQLAKQYDQS RTDINVADYW
60 70 80 90 100
VSEKLDGIRA RWNGTELFTR NGNKIFAPTW FTANWPETTI DGELWIGRGE
110 120 130 140 150
FERTASIVLS TMTNIELHSV ANASSSTVSS ADTIAAANSL SAKRWAKVRF
160 170 180 190 200
MAFDMPMMGE PFGRRLNMLN SLSKSTPNPT FAVIPQFKLT SIVSLDEKLE
210 220 230 240 250
QVTQEGGEGL MLHHEQALYT SGRSDKLLKV KRFEDAEGKV LALLPGKGRF
260 270 280 290 300
KGMMGSLLVE TREGIQFKLG TGFSENERQS PPAIGSWVTF KYYGLTKNGK
310
PKFASYLRTR PQTDLPN
Length:317
Mass (Da):35,373
Last modified:November 28, 2012 - v1
Checksum:iDD27E1C65C5A6F00
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003873 Genomic DNA. Translation: AFT94158.1.
RefSeqiWP_014978347.1. NC_018679.1.

Genome annotation databases

EnsemblBacteriaiAFT94158; AFT94158; AMBAS45_03390.
KEGGiamb:AMBAS45_03390.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003873 Genomic DNA. Translation: AFT94158.1.
RefSeqiWP_014978347.1. NC_018679.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAFT94158; AFT94158; AMBAS45_03390.
KEGGiamb:AMBAS45_03390.

Phylogenomic databases

KOiK10747.
OMAiVRGYWDG.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genomes of surface isolates of Alteromonas macleodii: the life of a widespread marine opportunistic copiotroph."
    Lopez-Perez M., Gonzaga A., Martin-Cuadrado A.B., Onyshchenko O., Ghavidel A., Ghai R., Rodriguez-Valera F.
    Sci. Rep. 2:696-696(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Balearic Sea AD45Imported.

Entry informationi

Entry nameiK0EC25_ALTMB
AccessioniPrimary (citable) accession number: K0EC25
Entry historyi
Integrated into UniProtKB/TrEMBL: November 28, 2012
Last sequence update: November 28, 2012
Last modified: July 22, 2015
This is version 14 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.