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K0EC25 (K0EC25_ALTMB) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 8. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length317 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL AFT94158.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
K0EC25 [UniParc].

Last modified November 28, 2012. Version 1.
Checksum: DD27E1C65C5A6F00

FASTA31735,373
        10         20         30         40         50         60 
MRNFLTAVYV LSITAIANVN ANYMLDTVEG LQLAKQYDQS RTDINVADYW VSEKLDGIRA 

        70         80         90        100        110        120 
RWNGTELFTR NGNKIFAPTW FTANWPETTI DGELWIGRGE FERTASIVLS TMTNIELHSV 

       130        140        150        160        170        180 
ANASSSTVSS ADTIAAANSL SAKRWAKVRF MAFDMPMMGE PFGRRLNMLN SLSKSTPNPT 

       190        200        210        220        230        240 
FAVIPQFKLT SIVSLDEKLE QVTQEGGEGL MLHHEQALYT SGRSDKLLKV KRFEDAEGKV 

       250        260        270        280        290        300 
LALLPGKGRF KGMMGSLLVE TREGIQFKLG TGFSENERQS PPAIGSWVTF KYYGLTKNGK 

       310 
PKFASYLRTR PQTDLPN 

« Hide

References

[1]"Genomes of surface isolates of Alteromonas macleodii: the life of a widespread marine opportunistic copiotroph."
Lopez-Perez M., Gonzaga A., Martin-Cuadrado A.B., Onyshchenko O., Ghavidel A., Ghai R., Rodriguez-Valera F.
Sci. Rep. 2:696-696(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Balearic Sea AD45.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP003873 Genomic DNA. Translation: AFT94158.1.
RefSeqYP_006801639.1. NC_018679.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAFT94158; AFT94158; AMBAS45_03390.
GeneID13746960.
KEGGamb:AMBAS45_03390.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameK0EC25_ALTMB
AccessionPrimary (citable) accession number: K0EC25
Entry history
Integrated into UniProtKB/TrEMBL: November 28, 2012
Last sequence update: November 28, 2012
Last modified: June 11, 2014
This is version 8 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)