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K0DFN1 (K0DFN1_BORGR) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 12. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length366 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids By similarity. HAMAP-Rule MF_01201

Catalytic activity

L-alanine = D-alanine. RuleBase RU004247 SAAS SAAS009006 HAMAP-Rule MF_01201

Cofactor

Pyridoxal phosphate By similarity. SAAS SAAS009006 HAMAP-Rule MF_01201

Pathway

Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1. RuleBase RU004247 HAMAP-Rule MF_01201

Sequence similarities

Belongs to the alanine racemase family. HAMAP-Rule MF_01201

Ontologies

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site351Proton acceptor; specific for D-alanine By similarity HAMAP-Rule MF_01201
Active site2621Proton acceptor; specific for L-alanine By similarity HAMAP-Rule MF_01201
Binding site1331Substrate By similarity HAMAP-Rule MF_01201
Binding site3101Substrate; via amide nitrogen By similarity HAMAP-Rule MF_01201

Amino acid modifications

Modified residue351N6-(pyridoxal phosphate)lysine By similarity HAMAP-Rule MF_01201

Sequences

Sequence LengthMass (Da)Tools
K0DFN1 [UniParc].

Last modified November 28, 2012. Version 1.
Checksum: 349EEFEAD8398E8D

FASTA36642,425
        10         20         30         40         50         60 
MSSNKTIIIN LNNLEHNLNL IKNKIGEKEI VATLKGDAYG HGLINIFKFF KEKKINYFGL 

        70         80         90        100        110        120 
SNIEDAKTLK KIDKNIKILM YIKVDKKEIK NLIKLELLPF VADFEYLFLI EKECALQKKK 

       130        140        150        160        170        180 
IKVHLKIDIG MNRYGIRIDS ALEIATYIQN SQFLELEGIC SHLPATENFK ITQKQIEQFL 

       190        200        210        220        230        240 
LVLETLKQKN INPKFVHISN SGHIINYKLN PQFNMVRPGL ILYGYCQSIK NKKTTLNFKP 

       250        260        270        280        290        300 
VLNLFSKVIF IKNVKKGEKI SYSGIFQAKE DMKIGIIPIG YFDGIPQNIN NNFYFLINNQ 

       310        320        330        340        350        360 
KCKIRGKVCM NLTIVEIPKD LKVRTGSKVE IVSEKLSIDK MSKFSKRSHY ELLCNIGKYE 


KRKYLD 

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References

[1]"Genome Sequence of Borrelia garinii Strain NMJW1, Isolated from China."
Jiang B., Yao H., Tong Y., Yang X., Huang Y., Jiang J., Cao W.
J. Bacteriol. 194:6660-6661(2012) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: NMJW1 EMBL AFT83493.1.
[2]Jiang B.G., Jiang J.F., Yao H.W., Cao W.C.
Submitted (SEP-2012) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: NMJW1 EMBL AFT83493.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP003866 Genomic DNA. Translation: AFT83493.1.
RefSeqYP_006870859.1. NC_018747.1.

3D structure databases

ProteinModelPortalK0DFN1.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAFT83493; AFT83493; BgCN_0158.
GeneID13812369.
KEGGbgn:BgCN_0158.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01775.

Enzyme and pathway databases

UniPathwayUPA00042; UER00497.

Family and domain databases

Gene3D2.40.37.10. 1 hit.
HAMAPMF_01201. Ala_racemase.
InterProIPR000821. Ala_racemase.
IPR009006. Ala_racemase/Decarboxylase_C.
IPR011079. Ala_racemase_C.
IPR001608. Ala_racemase_N.
IPR020622. Ala_racemase_pyridoxalP-BS.
[Graphical view]
PfamPF00842. Ala_racemase_C. 1 hit.
PF01168. Ala_racemase_N. 1 hit.
[Graphical view]
PRINTSPR00992. ALARACEMASE.
SMARTSM01005. Ala_racemase_C. 1 hit.
[Graphical view]
SUPFAMSSF50621. SSF50621. 1 hit.
TIGRFAMsTIGR00492. alr. 1 hit.
PROSITEPS00395. ALANINE_RACEMASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameK0DFN1_BORGR
AccessionPrimary (citable) accession number: K0DFN1
Entry history
Integrated into UniProtKB/TrEMBL: November 28, 2012
Last sequence update: November 28, 2012
Last modified: April 16, 2014
This is version 12 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)