K0DFN1 (K0DFN1_BORGR) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Alanine racemase RuleBase RU000608
EC=5.1.1.1 RuleBase RU000608

Gene names

ORF Names:

BgCN_0158 EMBL AFT83493.1

Organism

Borrelia garinii NMJW1 EMBL AFT83493.1

Taxonomic identifier

1234596 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Spirochaetes › Spirochaetia › Spirochaetales › Spirochaetaceae › Borrelia › Borrelia burgdorferi group › Borrelia garinii

Protein attributes

Sequence length	366 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	L-alanine = D-alanine. SAAS SAAS020622 RuleBase RU000608
Cofactor	Pyridoxal phosphate By similarity. SAAS SAAS020622 RuleBase RU000608
Pathway	Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1. SAAS SAAS020622 RuleBase RU004247
Sequence similarities	Belongs to the alanine racemase family. RuleBase RU004188

Ontologies

Keywords
Ligand	Pyridoxal phosphate SAAS SAAS020622 RuleBase RU000608
Molecular function	Isomerase SAAS SAAS020622 RuleBase RU000608
Gene Ontology (GO)
Biological_process	D-alanine biosynthetic process Inferred from electronic annotation. Source: UniProtKB-UniPathway
Molecular_function	alanine racemase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	K0DFN1 [UniParc]. Last modified November 28, 2012. Version 1. Checksum: 349EEFEAD8398E8D	FASTA	366	42,425
	10 20 30 40 50 60 MSSNKTIIIN LNNLEHNLNL IKNKIGEKEI VATLKGDAYG HGLINIFKFF KEKKINYFGL 70 80 90 100 110 120 SNIEDAKTLK KIDKNIKILM YIKVDKKEIK NLIKLELLPF VADFEYLFLI EKECALQKKK 130 140 150 160 170 180 IKVHLKIDIG MNRYGIRIDS ALEIATYIQN SQFLELEGIC SHLPATENFK ITQKQIEQFL 190 200 210 220 230 240 LVLETLKQKN INPKFVHISN SGHIINYKLN PQFNMVRPGL ILYGYCQSIK NKKTTLNFKP 250 260 270 280 290 300 VLNLFSKVIF IKNVKKGEKI SYSGIFQAKE DMKIGIIPIG YFDGIPQNIN NNFYFLINNQ 310 320 330 340 350 360 KCKIRGKVCM NLTIVEIPKD LKVRTGSKVE IVSEKLSIDK MSKFSKRSHY ELLCNIGKYE KRKYLD

References

[1]	"Genome Sequence of Borrelia garinii Strain NMJW1, Isolated from China." Jiang B., Yao H., Tong Y., Yang X., Huang Y., Jiang J., Cao W. J. Bacteriol. 194:6660-6661(2012) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: NMJW1 EMBL AFT83493.1.
[2]	Salehi R., Fisher C.A., Bignell P.A., Old J.M. Submitted (SEP-2012) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: NMJW1 EMBL AFT83493.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP003866 Genomic DNA. Translation: AFT83493.1.
RefSeq	YP_006870859.1. NC_018747.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AFT83493; AFT83493; BgCN_0158.
GeneID	13812369.
KEGG	bgn:BgCN_0158.
Phylogenomic databases
KO	K01775.
Enzyme and pathway databases
UniPathway	UPA00042; UER00497.
Family and domain databases
Gene3D	2.40.37.10. 1 hit.
HAMAP	MF_01201. Ala_racemase.
InterPro	IPR000821. Ala_racemase. IPR009006. Ala_racemase/Decarboxylase_C. IPR011079. Ala_racemase_C. IPR001608. Ala_racemase_N. IPR020622. Ala_racemase_pyridoxalP-BS. [Graphical view]
Pfam	PF00842. Ala_racemase_C. 1 hit. PF01168. Ala_racemase_N. 1 hit. [Graphical view]
PRINTS	PR00992. ALARACEMASE.
SMART	SM01005. Ala_racemase_C. 1 hit. [Graphical view]
SUPFAM	SSF50621. Racem_decarbox_C. 1 hit.
TIGRFAMs	TIGR00492. alr. 1 hit.
PROSITE	PS00395. ALANINE_RACEMASE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

K0DFN1_BORGR

Accession

Primary (citable) accession number: K0DFN1

Entry history

Integrated into UniProtKB/TrEMBL:	November 28, 2012
Last sequence update:	November 28, 2012
Last modified:	April 3, 2013
This is version 5 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)