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Protein
Submitted name:

DNA ligase

Gene

AMEC673_03345

Organism
Alteromonas macleodii (strain English Channel 673)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligaseImported (EC:6.5.1.1Imported)
Gene namesi
Ordered Locus Names:AMEC673_03345Imported
OrganismiAlteromonas macleodii (strain English Channel 673)Imported
Taxonomic identifieri1004788 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesAlteromonadaceaeAlteromonas
ProteomesiUP000006296: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.
OMAiVRGYWDG.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

K0CL63-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MRNFLTAVYV LSITAIANVN ANHMLDTVEG LQLAKQYDQS RTDINVADYW
60 70 80 90 100
VSEKLDGIRA RWNGTELLTR NGNKIFAPTW FTANWPETTI DGELWIGRGE
110 120 130 140 150
FERTASIVLS TMTNIELHSV ANASSSTVSS ADTIAAANSL SAKRWAKVRF
160 170 180 190 200
MAFDMPMMGE PFGRRLNRLN SLSKSTPNPT FAVIPQFKLT SIASLDEKLE
210 220 230 240 250
QVTQEGGEGL MLHHEQALYT SGRSDMLLKV KRFEDAEGKV LALLPGKGRF
260 270 280 290 300
KGMMGSLLVE TREGIQFKLG TGFSENERQS PPAIGSWVTF KYYGLTKNGK
310
PKFASYLRTR PQTDLPN
Length:317
Mass (Da):35,313
Last modified:November 28, 2012 - v1
Checksum:i2D61E420BA4113FE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003844 Genomic DNA. Translation: AFT73368.1.
RefSeqiWP_014948300.1. NC_018678.1.
YP_006797745.1. NC_018678.1.

Genome annotation databases

EnsemblBacteriaiAFT73368; AFT73368; AMEC673_03345.
GeneIDi13741379.
KEGGiamg:AMEC673_03345.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003844 Genomic DNA. Translation: AFT73368.1.
RefSeqiWP_014948300.1. NC_018678.1.
YP_006797745.1. NC_018678.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAFT73368; AFT73368; AMEC673_03345.
GeneIDi13741379.
KEGGiamg:AMEC673_03345.

Phylogenomic databases

KOiK01971.
OMAiVRGYWDG.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genomes of surface isolates of Alteromonas macleodii: the life of a widespread marine opportunistic copiotroph."
    Lopez-Perez M., Gonzaga A., Martin-Cuadrado A.B., Onyshchenko O., Ghavidel A., Ghai R., Rodriguez-Valera F.
    Sci. Rep. 2:696-696(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: English Channel 673Imported.

Entry informationi

Entry nameiK0CL63_ALTME
AccessioniPrimary (citable) accession number: K0CL63
Entry historyi
Integrated into UniProtKB/TrEMBL: November 28, 2012
Last sequence update: November 28, 2012
Last modified: January 7, 2015
This is version 12 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.