J9ZF19 (J9ZF19_LEPFM) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Alanine racemase RuleBase RU000608
EC=5.1.1.1 RuleBase RU000608

Gene names

Ordered Locus Names:

LFML04_2348 EMBL AFS54538.1

Organism

Leptospirillum ferriphilum (strain ML-04) [Complete proteome] [HAMAP] EMBL AFS54538.1

Taxonomic identifier

1048260 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Nitrospirae › Nitrospira › Nitrospirales › Nitrospiraceae › Leptospirillum › Leptospirillum sp. Group III › Leptospirillum ferriphilum

Protein attributes

Sequence length	406 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	L-alanine = D-alanine. SAAS SAAS020622 RuleBase RU000608
Cofactor	Pyridoxal phosphate By similarity. SAAS SAAS020622 RuleBase RU000608
Pathway	Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1. SAAS SAAS020622
Sequence similarities	Belongs to the alanine racemase family. RuleBase RU004188

Ontologies

Keywords
Ligand	Pyridoxal phosphate SAAS SAAS020622 RuleBase RU000608
Molecular function	Isomerase SAAS SAAS020622 RuleBase RU000608
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	D-alanine biosynthetic process Inferred from electronic annotation. Source: UniProtKB-UniPathway
Molecular_function	alanine racemase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	J9ZF19 [UniParc]. Last modified November 28, 2012. Version 1. Checksum: ACABD93C1AC26550	FASTA	406	44,851
	10 20 30 40 50 60 MESESSLIEI PGYAGRDLSR SRLIVDLDAL SNNLEWIRSR LPSSIEILPV VKADAYGHGM 70 80 90 100 110 120 LPVAKNFVEK GVPALGVMGL EEGVRLRKAE ISAKVIVMGG ILPSELEDCI AFGLTPVIHN 130 140 150 160 170 180 CELLEAALDL SRKMEVHIHL KFDVGMGRLG FLPEDISWVC DKIGMESSLR IEGVMSHFPE 190 200 210 220 230 240 GEKISETSRQ IGIFGCMVDE LWDRGALCDR PFVIHLANSA AFLSGQYSVT DKKNRAWEKY 250 260 270 280 290 300 ARYWIRPGIL LYGIPVDPLP LPGLKPAMEI QARLISLKTL SEGSRISYGG TLSLSRKTRV 310 320 330 340 350 360 GVLGMGYADG LPRELSNWGW ASRMGQKFPF LGRVCMDMVM VDVTDAESPV CLGDWMTVLG 370 380 390 400 NGEDSSMSAW DIAGRIRSIP YEIVCRMGNR SPRFYSRKAS SSENFG

References

[1]

"Complete genome of Leptospirillum ferriphilum ML-04 provides insight into its physiology and environmental adaptation." Mi S., Song J., Lin J., Che Y., Zheng H., Lin J. J. Microbiol. 49:890-901(2011) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ML-04 EMBL AFS54538.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP002919 Genomic DNA. Translation: AFS54538.1.
RefSeq	YP_006767498.1. NC_018649.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AFS54538; AFS54538; LFML04_2348.
GeneID	13688421.
KEGG	lfi:LFML04_2348.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K01775.
Enzyme and pathway databases
UniPathway	UPA00042; UER00497.
Family and domain databases
Gene3D	2.40.37.10. 1 hit.
HAMAP	MF_01201. Ala_racemase.
InterPro	IPR000821. Ala_racemase. IPR009006. Ala_racemase/Decarboxylase_C. IPR011079. Ala_racemase_C. IPR001608. Ala_racemase_N. IPR020622. Ala_racemase_pyridoxalP-BS. [Graphical view]
Pfam	PF00842. Ala_racemase_C. 1 hit. PF01168. Ala_racemase_N. 1 hit. [Graphical view]
PRINTS	PR00992. ALARACEMASE.
SMART	SM01005. Ala_racemase_C. 1 hit. [Graphical view]
SUPFAM	SSF50621. Racem_decarbox_C. 1 hit.
TIGRFAMs	TIGR00492. alr. 1 hit.
PROSITE	PS00395. ALANINE_RACEMASE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

J9ZF19_LEPFM

Accession

Primary (citable) accession number: J9ZF19

Entry history

Integrated into UniProtKB/TrEMBL:	November 28, 2012
Last sequence update:	November 28, 2012
Last modified:	April 3, 2013
This is version 5 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)