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J9ZF19

- J9ZF19_LEPFM

UniProt

J9ZF19 - J9ZF19_LEPFM

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Protein

Alanine racemase

Gene

LFML04_2348

Organism
Leptospirillum ferriphilum (strain ML-04)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids.UniRule annotation

Catalytic activityi

L-alanine = D-alanine.UniRule annotationSAAS annotation

Cofactori

Pyridoxal phosphate.UniRule annotationSAAS annotation

Pathwayi

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei52 – 521Proton acceptor; specific for D-alanineUniRule annotation
Binding sitei148 – 1481SubstrateUniRule annotation
Active sitei288 – 2881Proton acceptor; specific for L-alanineUniRule annotation
Binding sitei336 – 3361Substrate; via amide nitrogenUniRule annotation

GO - Molecular functioni

  1. alanine racemase activity Source: UniProtKB-HAMAP
  2. pyridoxal phosphate binding Source: UniProtKB-HAMAP

GO - Biological processi

  1. D-alanine biosynthetic process Source: UniProtKB-UniPathway
Complete GO annotation...

Keywords - Molecular functioni

IsomeraseUniRule annotationSAAS annotation

Keywords - Ligandi

Pyridoxal phosphateUniRule annotationSAAS annotation

Enzyme and pathway databases

UniPathwayiUPA00042; UER00497.

Names & Taxonomyi

Protein namesi
Recommended name:
Alanine racemaseUniRule annotation (EC:5.1.1.1UniRule annotation)
Gene namesi
Ordered Locus Names:LFML04_2348Imported
OrganismiLeptospirillum ferriphilum (strain ML-04)Imported
Taxonomic identifieri1048260 [NCBI]
Taxonomic lineageiBacteriaNitrospiraeNitrospiralesNitrospiraceaeLeptospirillum
ProteomesiUP000006177: Chromosome

PTM / Processingi

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei52 – 521N6-(pyridoxal phosphate)lysineUniRule annotation

Structurei

3D structure databases

ProteinModelPortaliJ9ZF19.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the alanine racemase family.UniRule annotation

Phylogenomic databases

KOiK01775.

Family and domain databases

Gene3Di2.40.37.10. 1 hit.
3.20.20.10. 1 hit.
HAMAPiMF_01201. Ala_racemase.
InterProiIPR000821. Ala_racemase.
IPR009006. Ala_racemase/Decarboxylase_C.
IPR011079. Ala_racemase_C.
IPR001608. Ala_racemase_N.
IPR020622. Ala_racemase_pyridoxalP-BS.
IPR029066. PLP-binding_barrel.
[Graphical view]
PfamiPF00842. Ala_racemase_C. 1 hit.
PF01168. Ala_racemase_N. 1 hit.
[Graphical view]
PRINTSiPR00992. ALARACEMASE.
SMARTiSM01005. Ala_racemase_C. 1 hit.
[Graphical view]
SUPFAMiSSF50621. SSF50621. 1 hit.
SSF51419. SSF51419. 1 hit.
TIGRFAMsiTIGR00492. alr. 1 hit.
PROSITEiPS00395. ALANINE_RACEMASE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

J9ZF19-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MESESSLIEI PGYAGRDLSR SRLIVDLDAL SNNLEWIRSR LPSSIEILPV
60 70 80 90 100
VKADAYGHGM LPVAKNFVEK GVPALGVMGL EEGVRLRKAE ISAKVIVMGG
110 120 130 140 150
ILPSELEDCI AFGLTPVIHN CELLEAALDL SRKMEVHIHL KFDVGMGRLG
160 170 180 190 200
FLPEDISWVC DKIGMESSLR IEGVMSHFPE GEKISETSRQ IGIFGCMVDE
210 220 230 240 250
LWDRGALCDR PFVIHLANSA AFLSGQYSVT DKKNRAWEKY ARYWIRPGIL
260 270 280 290 300
LYGIPVDPLP LPGLKPAMEI QARLISLKTL SEGSRISYGG TLSLSRKTRV
310 320 330 340 350
GVLGMGYADG LPRELSNWGW ASRMGQKFPF LGRVCMDMVM VDVTDAESPV
360 370 380 390 400
CLGDWMTVLG NGEDSSMSAW DIAGRIRSIP YEIVCRMGNR SPRFYSRKAS

SSENFG
Length:406
Mass (Da):44,851
Last modified:November 28, 2012 - v1
Checksum:iACABD93C1AC26550
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002919 Genomic DNA. Translation: AFS54538.1.
RefSeqiWP_014962041.1. NC_018649.1.
YP_006767498.1. NC_018649.1.

Genome annotation databases

EnsemblBacteriaiAFS54538; AFS54538; LFML04_2348.
GeneIDi13688421.
KEGGilfi:LFML04_2348.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP002919 Genomic DNA. Translation: AFS54538.1 .
RefSeqi WP_014962041.1. NC_018649.1.
YP_006767498.1. NC_018649.1.

3D structure databases

ProteinModelPortali J9ZF19.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AFS54538 ; AFS54538 ; LFML04_2348 .
GeneIDi 13688421.
KEGGi lfi:LFML04_2348.

Phylogenomic databases

KOi K01775.

Enzyme and pathway databases

UniPathwayi UPA00042 ; UER00497 .

Family and domain databases

Gene3Di 2.40.37.10. 1 hit.
3.20.20.10. 1 hit.
HAMAPi MF_01201. Ala_racemase.
InterProi IPR000821. Ala_racemase.
IPR009006. Ala_racemase/Decarboxylase_C.
IPR011079. Ala_racemase_C.
IPR001608. Ala_racemase_N.
IPR020622. Ala_racemase_pyridoxalP-BS.
IPR029066. PLP-binding_barrel.
[Graphical view ]
Pfami PF00842. Ala_racemase_C. 1 hit.
PF01168. Ala_racemase_N. 1 hit.
[Graphical view ]
PRINTSi PR00992. ALARACEMASE.
SMARTi SM01005. Ala_racemase_C. 1 hit.
[Graphical view ]
SUPFAMi SSF50621. SSF50621. 1 hit.
SSF51419. SSF51419. 1 hit.
TIGRFAMsi TIGR00492. alr. 1 hit.
PROSITEi PS00395. ALANINE_RACEMASE. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete genome of Leptospirillum ferriphilum ML-04 provides insight into its physiology and environmental adaptation."
    Mi S., Song J., Lin J., Che Y., Zheng H., Lin J.
    J. Microbiol. 49:890-901(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ML-04Imported.

Entry informationi

Entry nameiJ9ZF19_LEPFM
AccessioniPrimary (citable) accession number: J9ZF19
Entry historyi
Integrated into UniProtKB/TrEMBL: November 28, 2012
Last sequence update: November 28, 2012
Last modified: October 29, 2014
This is version 14 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3