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J9ZF19 (J9ZF19_LEPFM) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 10. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length406 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids By similarity. HAMAP-Rule MF_01201

Catalytic activity

L-alanine = D-alanine. HAMAP-Rule MF_01201 SAAS SAAS009006

Cofactor

Pyridoxal phosphate By similarity. SAAS SAAS009006 HAMAP-Rule MF_01201

Pathway

Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1. HAMAP-Rule MF_01201

Sequence similarities

Belongs to the alanine racemase family. RuleBase RU004188 HAMAP-Rule MF_01201

Ontologies

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site521Proton acceptor; specific for D-alanine By similarity HAMAP-Rule MF_01201
Active site2881Proton acceptor; specific for L-alanine By similarity HAMAP-Rule MF_01201
Binding site1481Substrate By similarity HAMAP-Rule MF_01201
Binding site3361Substrate; via amide nitrogen By similarity HAMAP-Rule MF_01201

Amino acid modifications

Modified residue521N6-(pyridoxal phosphate)lysine By similarity HAMAP-Rule MF_01201

Sequences

Sequence LengthMass (Da)Tools
J9ZF19 [UniParc].

Last modified November 28, 2012. Version 1.
Checksum: ACABD93C1AC26550

FASTA40644,851
        10         20         30         40         50         60 
MESESSLIEI PGYAGRDLSR SRLIVDLDAL SNNLEWIRSR LPSSIEILPV VKADAYGHGM 

        70         80         90        100        110        120 
LPVAKNFVEK GVPALGVMGL EEGVRLRKAE ISAKVIVMGG ILPSELEDCI AFGLTPVIHN 

       130        140        150        160        170        180 
CELLEAALDL SRKMEVHIHL KFDVGMGRLG FLPEDISWVC DKIGMESSLR IEGVMSHFPE 

       190        200        210        220        230        240 
GEKISETSRQ IGIFGCMVDE LWDRGALCDR PFVIHLANSA AFLSGQYSVT DKKNRAWEKY 

       250        260        270        280        290        300 
ARYWIRPGIL LYGIPVDPLP LPGLKPAMEI QARLISLKTL SEGSRISYGG TLSLSRKTRV 

       310        320        330        340        350        360 
GVLGMGYADG LPRELSNWGW ASRMGQKFPF LGRVCMDMVM VDVTDAESPV CLGDWMTVLG 

       370        380        390        400 
NGEDSSMSAW DIAGRIRSIP YEIVCRMGNR SPRFYSRKAS SSENFG 

« Hide

References

[1]"Complete genome of Leptospirillum ferriphilum ML-04 provides insight into its physiology and environmental adaptation."
Mi S., Song J., Lin J., Che Y., Zheng H., Lin J.
J. Microbiol. 49:890-901(2011) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ML-04 EMBL AFS54538.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP002919 Genomic DNA. Translation: AFS54538.1.
RefSeqYP_006767498.1. NC_018649.1.

3D structure databases

ProteinModelPortalJ9ZF19.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAFS54538; AFS54538; LFML04_2348.
GeneID13688421.
KEGGlfi:LFML04_2348.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01775.

Enzyme and pathway databases

UniPathwayUPA00042; UER00497.

Family and domain databases

Gene3D2.40.37.10. 1 hit.
HAMAPMF_01201. Ala_racemase.
InterProIPR000821. Ala_racemase.
IPR009006. Ala_racemase/Decarboxylase_C.
IPR011079. Ala_racemase_C.
IPR001608. Ala_racemase_N.
IPR020622. Ala_racemase_pyridoxalP-BS.
[Graphical view]
PfamPF00842. Ala_racemase_C. 1 hit.
PF01168. Ala_racemase_N. 1 hit.
[Graphical view]
PRINTSPR00992. ALARACEMASE.
SMARTSM01005. Ala_racemase_C. 1 hit.
[Graphical view]
SUPFAMSSF50621. SSF50621. 1 hit.
TIGRFAMsTIGR00492. alr. 1 hit.
PROSITEPS00395. ALANINE_RACEMASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameJ9ZF19_LEPFM
AccessionPrimary (citable) accession number: J9ZF19
Entry history
Integrated into UniProtKB/TrEMBL: November 28, 2012
Last sequence update: November 28, 2012
Last modified: February 19, 2014
This is version 10 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)