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Protein

Glutamate decarboxylase

Gene

LFML04_0731

Organism
Leptospirillum ferriphilum (strain ML-04)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

L-glutamate = 4-aminobutanoate + CO2.UniRule annotation

Cofactori

pyridoxal 5'-phosphateUniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

DecarboxylaseUniRule annotation, Lyase

Keywords - Ligandi

Pyridoxal phosphateUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Glutamate decarboxylaseUniRule annotation (EC:4.1.1.15UniRule annotation)
Gene namesi
Ordered Locus Names:LFML04_0731Imported
OrganismiLeptospirillum ferriphilum (strain ML-04)Imported
Taxonomic identifieri1048260 [NCBI]
Taxonomic lineageiBacteriaNitrospiraeNitrospiralesNitrospiraceaeLeptospirillum
ProteomesiUP000006177 Componenti: Chromosome

Structurei

3D structure databases

ProteinModelPortaliJ9Z8Y3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the group II decarboxylase family.UniRule annotation

Phylogenomic databases

KOiK01580.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PANTHERiPTHR11999:SF1. PTHR11999:SF1. 1 hit.
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR01788. Glu-decarb-GAD. 1 hit.

Sequencei

Sequence statusi: Complete.

J9Z8Y3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLTRRRHSQT RDDSLSATYG NRFFTKDLKT FRMGEDSLPP ASVYQIIHDE
60 70 80 90 100
LELDGNPSLN LASFVTTWME PEAEQLIREN LRKNLVDQSE YPRTGEIQHR
110 120 130 140 150
VIHMLADLFH APDDADIAGT STIGSSEAIL LGLLAHKKSW QNRRKTAGKP
160 170 180 190 200
ADRPNLVLGG EVHVVWDKFA RYFDVELRTV PLSPARFTLD VQEAVRRIDE
210 220 230 240 250
NTIAVGAVVG TTFTGQIDPV EELNEAVEKK NREQGWRVPI HVDGASGGLI
260 270 280 290 300
LPFLEPERRW DFRLSAVRSI NVSGHKFGLV YPGVGWLLFR DRKDLPDDLV
310 320 330 340 350
FRVNYLGAEE ETYTLNFSSN AAFVIAQYYN LLRLGKKGYR SIMENCRDNA
360 370 380 390 400
RFLAKELAAG KTFEPVEKKP LLPIVAFRLR GKHAGREPEI ASELRKYGWI
410 420 430 440 450
VPAYTLPPDA ENITLLRVVV RENVSRQMLV ELLAHLDRCA GILENPATKR

KTHPPLC
Length:457
Mass (Da):51,800
Last modified:November 28, 2012 - v1
Checksum:i385010175AA335DD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002919 Genomic DNA. Translation: AFS52965.1.
RefSeqiWP_014960475.1. NC_018649.1.

Genome annotation databases

EnsemblBacteriaiAFS52965; AFS52965; LFML04_0731.
KEGGilfi:LFML04_0731.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002919 Genomic DNA. Translation: AFS52965.1.
RefSeqiWP_014960475.1. NC_018649.1.

3D structure databases

ProteinModelPortaliJ9Z8Y3.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAFS52965; AFS52965; LFML04_0731.
KEGGilfi:LFML04_0731.

Phylogenomic databases

KOiK01580.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PANTHERiPTHR11999:SF1. PTHR11999:SF1. 1 hit.
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR01788. Glu-decarb-GAD. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Complete genome of Leptospirillum ferriphilum ML-04 provides insight into its physiology and environmental adaptation."
    Mi S., Song J., Lin J., Che Y., Zheng H., Lin J.
    J. Microbiol. 49:890-901(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ML-04Imported.

Entry informationi

Entry nameiJ9Z8Y3_LEPFM
AccessioniPrimary (citable) accession number: J9Z8Y3
Entry historyi
Integrated into UniProtKB/TrEMBL: November 28, 2012
Last sequence update: November 28, 2012
Last modified: July 22, 2015
This is version 16 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.