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J9YFL4

- J9YFL4_ALTMA

UniProt

J9YFL4 - J9YFL4_ALTMA

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Protein
Submitted name:

DNA ligase

Gene
MASE_17695
Organism
Alteromonas macleodii ATCC 27126
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligaseImported
Gene namesi
ORF Names:MASE_17695Imported
OrganismiAlteromonas macleodii ATCC 27126Imported
Taxonomic identifieri529120 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesAlteromonadaceaeAlteromonas
ProteomesiUP000006102: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

J9YFL4-1 [UniParc]FASTAAdd to Basket

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MKAFSNLLEQ LYYTSGNKAK AQLIADYIAN TPDPDRGWAI AAMAGTLRFD    50
FFKRNTVKKL ITEHTDSALF AMSYDYVGEV SETVAHLWPY SEPTDNLPSL 100
TEVVETFASV SKQKVSETLA NYLTIMTPAQ RWALLKLGTR GLRIGVSARS 150
IKQILADYGN KDIKEIETLW HAVTPPYTDM LAWLEGKADK PDIENAVTFH 200
PVMLSHPIED SDIDAFTENT WQIENKYDGI RVQLAVKSEP IASKCATRKD 250
QNDNKKGQTI DEETPDKALF SRTGDDISHS FPDLLETVKG NMVLDGELLV 300
IHNVKGDAYD AMASQPNVDT FNALQQRLNK KKPSKALQAS SPVGLIVYDA 350
LVLDGKDLTE KTLKERRQAL HEWFNHNKSE RLFLSETLSA SSPKSLRELH 400
AHVCQNRAVE GLMIKRLDSK YIPGRPKGQW FKWKRDPLVV DAVMMYAQRG 450
HGKRSSFYSD YTFGAWEDDQ LLPIGKAYSG FTDEELKKLD NWVRRNAVGR 500
FGPVREVKKD LVLEVAFDAV HPSSRHKSGV ALRFPRIHRI RWDKPAVEAD 550
TLTNVKALIE N 561
Length:561
Mass (Da):63,411
Last modified:November 28, 2012 - v1
Checksum:i4BB597668E7BA6A3
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP003841 Genomic DNA. Translation: AFS39029.1.
RefSeqiWP_014951070.1. NC_018632.1.
YP_006749583.1. NC_018632.1.

Genome annotation databases

EnsemblBacteriaiAFS39029; AFS39029; MASE_17695.
GeneIDi13670451.
KEGGiamac:MASE_17695.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP003841 Genomic DNA. Translation: AFS39029.1 .
RefSeqi WP_014951070.1. NC_018632.1.
YP_006749583.1. NC_018632.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AFS39029 ; AFS39029 ; MASE_17695 .
GeneIDi 13670451.
KEGGi amac:MASE_17695.

Phylogenomic databases

KOi K01971.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Comparative genomics of two ecotypes of the marine planktonic copiotroph Alteromonas macleodii suggests alternative lifestyles associated with different kinds of particulate organic matter."
    Ivars-Martinez E., Martin-Cuadrado A.B., D'Auria G., Mira A., Ferriera S., Johnson J., Friedman R., Rodriguez-Valera F.
    ISME J. 2:1194-1212(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 27126Imported.

Entry informationi

Entry nameiJ9YFL4_ALTMA
AccessioniPrimary (citable) accession number: J9YFL4
Entry historyi
Integrated into UniProtKB/TrEMBL: November 28, 2012
Last sequence update: November 28, 2012
Last modified: September 3, 2014
This is version 9 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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