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J9YFL4

- J9YFL4_ALTMA

UniProt

J9YFL4 - J9YFL4_ALTMA

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Protein
Submitted name:

DNA ligase

Gene

MASE_17695

Organism
Alteromonas macleodii ATCC 27126
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligaseImported
Gene namesi
ORF Names:MASE_17695Imported
OrganismiAlteromonas macleodii ATCC 27126Imported
Taxonomic identifieri529120 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesAlteromonadaceaeAlteromonas
ProteomesiUP000006102: Chromosome

Family & Domainsi

Phylogenomic databases

KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

J9YFL4-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MKAFSNLLEQ LYYTSGNKAK AQLIADYIAN TPDPDRGWAI AAMAGTLRFD
60 70 80 90 100
FFKRNTVKKL ITEHTDSALF AMSYDYVGEV SETVAHLWPY SEPTDNLPSL
110 120 130 140 150
TEVVETFASV SKQKVSETLA NYLTIMTPAQ RWALLKLGTR GLRIGVSARS
160 170 180 190 200
IKQILADYGN KDIKEIETLW HAVTPPYTDM LAWLEGKADK PDIENAVTFH
210 220 230 240 250
PVMLSHPIED SDIDAFTENT WQIENKYDGI RVQLAVKSEP IASKCATRKD
260 270 280 290 300
QNDNKKGQTI DEETPDKALF SRTGDDISHS FPDLLETVKG NMVLDGELLV
310 320 330 340 350
IHNVKGDAYD AMASQPNVDT FNALQQRLNK KKPSKALQAS SPVGLIVYDA
360 370 380 390 400
LVLDGKDLTE KTLKERRQAL HEWFNHNKSE RLFLSETLSA SSPKSLRELH
410 420 430 440 450
AHVCQNRAVE GLMIKRLDSK YIPGRPKGQW FKWKRDPLVV DAVMMYAQRG
460 470 480 490 500
HGKRSSFYSD YTFGAWEDDQ LLPIGKAYSG FTDEELKKLD NWVRRNAVGR
510 520 530 540 550
FGPVREVKKD LVLEVAFDAV HPSSRHKSGV ALRFPRIHRI RWDKPAVEAD
560
TLTNVKALIE N
Length:561
Mass (Da):63,411
Last modified:November 28, 2012 - v1
Checksum:i4BB597668E7BA6A3
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP003841 Genomic DNA. Translation: AFS39029.1.
RefSeqiYP_006749583.1. NC_018632.1.

Genome annotation databases

EnsemblBacteriaiAFS39029; AFS39029; MASE_17695.
GeneIDi13670451.
KEGGiamac:MASE_17695.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP003841 Genomic DNA. Translation: AFS39029.1 .
RefSeqi YP_006749583.1. NC_018632.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AFS39029 ; AFS39029 ; MASE_17695 .
GeneIDi 13670451.
KEGGi amac:MASE_17695.

Phylogenomic databases

KOi K01971.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Comparative genomics of two ecotypes of the marine planktonic copiotroph Alteromonas macleodii suggests alternative lifestyles associated with different kinds of particulate organic matter."
    Ivars-Martinez E., Martin-Cuadrado A.-B., D'Auria G., Mira A., Ferriera S., Johnson J., Friedman R., Rodriguez-Valera F.
    ISME J. 2:1194-1212(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 27126Imported.

Entry informationi

Entry nameiJ9YFL4_ALTMA
AccessioniPrimary (citable) accession number: J9YFL4
Entry historyi
Integrated into UniProtKB/TrEMBL: November 28, 2012
Last sequence update: November 28, 2012
Last modified: October 29, 2014
This is version 11 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3