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J9YFL4

- J9YFL4_ALTMA

UniProt

J9YFL4 - J9YFL4_ALTMA

Protein
Submitted name:

DNA ligase

Gene

MASE_17695

Organism
Alteromonas macleodii ATCC 27126
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 10 (01 Oct 2014)
      Sequence version 1 (28 Nov 2012)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligaseImported
    Gene namesi
    ORF Names:MASE_17695Imported
    OrganismiAlteromonas macleodii ATCC 27126Imported
    Taxonomic identifieri529120 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesAlteromonadaceaeAlteromonas
    ProteomesiUP000006102: Chromosome

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    J9YFL4-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKAFSNLLEQ LYYTSGNKAK AQLIADYIAN TPDPDRGWAI AAMAGTLRFD    50
    FFKRNTVKKL ITEHTDSALF AMSYDYVGEV SETVAHLWPY SEPTDNLPSL 100
    TEVVETFASV SKQKVSETLA NYLTIMTPAQ RWALLKLGTR GLRIGVSARS 150
    IKQILADYGN KDIKEIETLW HAVTPPYTDM LAWLEGKADK PDIENAVTFH 200
    PVMLSHPIED SDIDAFTENT WQIENKYDGI RVQLAVKSEP IASKCATRKD 250
    QNDNKKGQTI DEETPDKALF SRTGDDISHS FPDLLETVKG NMVLDGELLV 300
    IHNVKGDAYD AMASQPNVDT FNALQQRLNK KKPSKALQAS SPVGLIVYDA 350
    LVLDGKDLTE KTLKERRQAL HEWFNHNKSE RLFLSETLSA SSPKSLRELH 400
    AHVCQNRAVE GLMIKRLDSK YIPGRPKGQW FKWKRDPLVV DAVMMYAQRG 450
    HGKRSSFYSD YTFGAWEDDQ LLPIGKAYSG FTDEELKKLD NWVRRNAVGR 500
    FGPVREVKKD LVLEVAFDAV HPSSRHKSGV ALRFPRIHRI RWDKPAVEAD 550
    TLTNVKALIE N 561
    Length:561
    Mass (Da):63,411
    Last modified:November 28, 2012 - v1
    Checksum:i4BB597668E7BA6A3
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003841 Genomic DNA. Translation: AFS39029.1.
    RefSeqiWP_014951070.1. NC_018632.1.
    YP_006749583.1. NC_018632.1.

    Genome annotation databases

    EnsemblBacteriaiAFS39029; AFS39029; MASE_17695.
    GeneIDi13670451.
    KEGGiamac:MASE_17695.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP003841 Genomic DNA. Translation: AFS39029.1 .
    RefSeqi WP_014951070.1. NC_018632.1.
    YP_006749583.1. NC_018632.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AFS39029 ; AFS39029 ; MASE_17695 .
    GeneIDi 13670451.
    KEGGi amac:MASE_17695.

    Phylogenomic databases

    KOi K01971.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Comparative genomics of two ecotypes of the marine planktonic copiotroph Alteromonas macleodii suggests alternative lifestyles associated with different kinds of particulate organic matter."
      Ivars-Martinez E., Martin-Cuadrado A.-B., D'Auria G., Mira A., Ferriera S., Johnson J., Friedman R., Rodriguez-Valera F.
      ISME J. 2:1194-1212(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 27126Imported.

    Entry informationi

    Entry nameiJ9YFL4_ALTMA
    AccessioniPrimary (citable) accession number: J9YFL4
    Entry historyi
    Integrated into UniProtKB/TrEMBL: November 28, 2012
    Last sequence update: November 28, 2012
    Last modified: October 1, 2014
    This is version 10 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3