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J9YFL4 (J9YFL4_ALTMA) Unreviewed, UniProtKB/TrEMBL

Last modified January 22, 2014. Version 7. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
ORF Names:MASE_17695 EMBL AFS39029.1
OrganismAlteromonas macleodii ATCC 27126 [Complete proteome] EMBL AFS39029.1
Taxonomic identifier529120 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesAlteromonadaceaeAlteromonas

Protein attributes

Sequence length561 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
J9YFL4 [UniParc].

Last modified November 28, 2012. Version 1.
Checksum: 4BB597668E7BA6A3

FASTA56163,411
        10         20         30         40         50         60 
MKAFSNLLEQ LYYTSGNKAK AQLIADYIAN TPDPDRGWAI AAMAGTLRFD FFKRNTVKKL 

        70         80         90        100        110        120 
ITEHTDSALF AMSYDYVGEV SETVAHLWPY SEPTDNLPSL TEVVETFASV SKQKVSETLA 

       130        140        150        160        170        180 
NYLTIMTPAQ RWALLKLGTR GLRIGVSARS IKQILADYGN KDIKEIETLW HAVTPPYTDM 

       190        200        210        220        230        240 
LAWLEGKADK PDIENAVTFH PVMLSHPIED SDIDAFTENT WQIENKYDGI RVQLAVKSEP 

       250        260        270        280        290        300 
IASKCATRKD QNDNKKGQTI DEETPDKALF SRTGDDISHS FPDLLETVKG NMVLDGELLV 

       310        320        330        340        350        360 
IHNVKGDAYD AMASQPNVDT FNALQQRLNK KKPSKALQAS SPVGLIVYDA LVLDGKDLTE 

       370        380        390        400        410        420 
KTLKERRQAL HEWFNHNKSE RLFLSETLSA SSPKSLRELH AHVCQNRAVE GLMIKRLDSK 

       430        440        450        460        470        480 
YIPGRPKGQW FKWKRDPLVV DAVMMYAQRG HGKRSSFYSD YTFGAWEDDQ LLPIGKAYSG 

       490        500        510        520        530        540 
FTDEELKKLD NWVRRNAVGR FGPVREVKKD LVLEVAFDAV HPSSRHKSGV ALRFPRIHRI 

       550        560 
RWDKPAVEAD TLTNVKALIE N 

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References

[1]"Comparative genomics of two ecotypes of the marine planktonic copiotroph Alteromonas macleodii suggests alternative lifestyles associated with different kinds of particulate organic matter."
Ivars-Martinez E., Martin-Cuadrado A.-B., D'Auria G., Mira A., Ferriera S., Johnson J., Friedman R., Rodriguez-Valera F.
ISME J. 2:1194-1212(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 27126 EMBL AFS39029.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP003841 Genomic DNA. Translation: AFS39029.1.
RefSeqYP_006749583.1. NC_018632.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAFS39029; AFS39029; MASE_17695.
GeneID13670451.
KEGGamac:MASE_17695.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR04120. DNA_lig_bact. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameJ9YFL4_ALTMA
AccessionPrimary (citable) accession number: J9YFL4
Entry history
Integrated into UniProtKB/TrEMBL: November 28, 2012
Last sequence update: November 28, 2012
Last modified: January 22, 2014
This is version 7 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)