J9YC71 (J9YC71_ALTMA) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Glutamate decarboxylase putative EMBL AFS38962.1

Gene names

ORF Names:

MASE_17360 EMBL AFS38962.1

Organism

Alteromonas macleodii ATCC 27126 EMBL AFS38962.1

Taxonomic identifier

529120 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Alteromonadaceae › Alteromonas › Alteromonas macleodii

Protein attributes

Sequence length	544 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Cofactor	Pyridoxal phosphate By similarity. RuleBase RU000382
Sequence similarities	Belongs to the group II decarboxylase family. RuleBase RU000382

Ontologies

Keywords
Ligand	Pyridoxal phosphate RuleBase RU000382
Molecular function	Lyase RuleBase RU000382
Gene Ontology (GO)
Biological_process	carboxylic acid metabolic process Inferred from electronic annotation. Source: InterPro
Molecular_function	carboxy-lyase activity Inferred from electronic annotation. Source: InterPro pyridoxal phosphate binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	J9YC71 [UniParc]. Last modified November 28, 2012. Version 1. Checksum: B98DDE34B1D367EB	FASTA	544	60,152
	10 20 30 40 50 60 MGEAQVSLEH LFRVFTKPEH KDSKLAQIEQ HLSDNILDFL SQHVVTKKTS LEEIEKDFSD 70 80 90 100 110 120 SKVPESPEFV STHAESLLDK LVAHSVNTYS PTFIGHMTSA LPYFHLPLSK LMVGLNQNLV 130 140 150 160 170 180 KIETSKAFTP LERQVLGMMH NLVYDQPQSF YDNHLHSAAH SLGAFCSGGT IANITALWVA 190 200 210 220 230 240 RNKLLGPQKG FSGVAKAGLA AAYRHYNINN LGVMCSKRGH YSLSKAVDVL GLGREQLLTV 250 260 270 280 290 300 PAPKQTLDPA KALRIGKRYQ EEGNKLLAIV GVGGTTETGH VDPLDELADV AKELGCWFHV 310 320 330 340 350 360 DAAWGGATLF SARYRDRLKG IERADSVTID AHKQMYVPMG AGMALFKDPQ NANAVRHHAQ 370 380 390 400 410 420 YILRAGSKDL GATTLEGSRN GMAMMVYSAL HIFGRKGYEL LIDRSIDKAK DFAQMIDKAQ 430 440 450 460 470 480 DFELTTTPIL SLLTYRVCPA EVQEKLKHVN AKTRNAINEK VDALVVAVQK QQREAGKSFV 490 500 510 520 530 540 SRTRLEAPDY PSQCITVFRV VLANPLTSHN DLAAILAEQH LIAKETQAWK ELMDFVRETE TVAS

References

[1]

"Comparative genomics of two ecotypes of the marine planktonic copiotroph Alteromonas macleodii suggests alternative lifestyles associated with different kinds of particulate organic matter." Ivars-Martinez E., Martin-Cuadrado A.B., D'Auria G., Mira A., Ferriera S., Johnson J., Friedman R., Rodriguez-Valera F. ISME J. 2:1194-1212(2008) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: ATCC 27126 EMBL AFS38962.1.

[2]

"Complete Genome Sequence of the Copiotrophic Marine Bacterium Alteromonas macleodii Strain ATCC 27126T." Gonzaga A., Lopez-Perez M., Martin-Cuadrado A.B., Ghai R., Rodriguez-Valera F. J. Bacteriol. 194:6998-6998(2012) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: ATCC 27126 EMBL AFS38962.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP003841 Genomic DNA. Translation: AFS38962.1.
RefSeq	YP_006749516.1. NC_018632.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	13670382.
KEGG	amac:MASE_17360.
Phylogenomic databases
KO	K01580.
Family and domain databases
Gene3D	3.40.640.10. 1 hit. 3.90.1150.10. 1 hit.
InterPro	IPR022517. Asp_decarboxylase_pyridox. IPR002129. PyrdxlP-dep_de-COase. IPR015424. PyrdxlP-dep_Trfase. IPR015421. PyrdxlP-dep_Trfase_major_sub1. IPR015422. PyrdxlP-dep_Trfase_major_sub2. [Graphical view]
Pfam	PF00282. Pyridoxal_deC. 1 hit. [Graphical view]
SUPFAM	SSF53383. PyrdxlP-dep_Trfase_major. 1 hit.
TIGRFAMs	TIGR03799. NOD_PanD_pyr. 1 hit.
ProtoNet	Search...

Entry information

Entry name

J9YC71_ALTMA

Accession

Primary (citable) accession number: J9YC71

Entry history

Integrated into UniProtKB/TrEMBL:	November 28, 2012
Last sequence update:	November 28, 2012
Last modified:	March 6, 2013
This is version 4 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)