Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Glutamate decarboxylase putative

Gene

MASE_17360

Organism
Alteromonas macleodii ATCC 27126
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Cofactori

pyridoxal 5'-phosphateUniRule annotation

GO - Molecular functioni

  1. carboxy-lyase activity Source: InterPro
  2. pyridoxal phosphate binding Source: InterPro

GO - Biological processi

  1. carboxylic acid metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LyaseUniRule annotation

Keywords - Ligandi

Pyridoxal phosphateUniRule annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Glutamate decarboxylase putativeImported
Gene namesi
ORF Names:MASE_17360Imported
OrganismiAlteromonas macleodii ATCC 27126Imported
Taxonomic identifieri529120 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesAlteromonadaceaeAlteromonas
ProteomesiUP000006102 Componenti: Chromosome

Family & Domainsi

Sequence similaritiesi

Belongs to the group II decarboxylase family.UniRule annotation

Phylogenomic databases

KOiK01580.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR022517. Asp_decarboxylase_pyridox.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR03799. NOD_PanD_pyr. 1 hit.

Sequencei

Sequence statusi: Complete.

J9YC71-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGEAQVSLEH LFRVFTKPEH KDSKLAQIEQ HLSDNILDFL SQHVVTKKTS
60 70 80 90 100
LEEIEKDFSD SKVPESPEFV STHAESLLDK LVAHSVNTYS PTFIGHMTSA
110 120 130 140 150
LPYFHLPLSK LMVGLNQNLV KIETSKAFTP LERQVLGMMH NLVYDQPQSF
160 170 180 190 200
YDNHLHSAAH SLGAFCSGGT IANITALWVA RNKLLGPQKG FSGVAKAGLA
210 220 230 240 250
AAYRHYNINN LGVMCSKRGH YSLSKAVDVL GLGREQLLTV PAPKQTLDPA
260 270 280 290 300
KALRIGKRYQ EEGNKLLAIV GVGGTTETGH VDPLDELADV AKELGCWFHV
310 320 330 340 350
DAAWGGATLF SARYRDRLKG IERADSVTID AHKQMYVPMG AGMALFKDPQ
360 370 380 390 400
NANAVRHHAQ YILRAGSKDL GATTLEGSRN GMAMMVYSAL HIFGRKGYEL
410 420 430 440 450
LIDRSIDKAK DFAQMIDKAQ DFELTTTPIL SLLTYRVCPA EVQEKLKHVN
460 470 480 490 500
AKTRNAINEK VDALVVAVQK QQREAGKSFV SRTRLEAPDY PSQCITVFRV
510 520 530 540
VLANPLTSHN DLAAILAEQH LIAKETQAWK ELMDFVRETE TVAS
Length:544
Mass (Da):60,152
Last modified:November 27, 2012 - v1
Checksum:iB98DDE34B1D367EB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003841 Genomic DNA. Translation: AFS38962.1.
RefSeqiYP_006749516.1. NC_018632.1.

Genome annotation databases

EnsemblBacteriaiAFS38962; AFS38962; MASE_17360.
KEGGiamac:MASE_17360.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003841 Genomic DNA. Translation: AFS38962.1.
RefSeqiYP_006749516.1. NC_018632.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAFS38962; AFS38962; MASE_17360.
KEGGiamac:MASE_17360.

Phylogenomic databases

KOiK01580.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR022517. Asp_decarboxylase_pyridox.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR03799. NOD_PanD_pyr. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Comparative genomics of two ecotypes of the marine planktonic copiotroph Alteromonas macleodii suggests alternative lifestyles associated with different kinds of particulate organic matter."
    Ivars-Martinez E., Martin-Cuadrado A.-B., D'Auria G., Mira A., Ferriera S., Johnson J., Friedman R., Rodriguez-Valera F.
    ISME J. 2:1194-1212(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 27126Imported.

Entry informationi

Entry nameiJ9YC71_ALTMA
AccessioniPrimary (citable) accession number: J9YC71
Entry historyi
Integrated into UniProtKB/TrEMBL: November 27, 2012
Last sequence update: November 27, 2012
Last modified: March 31, 2015
This is version 13 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.