Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

J9YC71 (J9YC71_ALTMA) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 8. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names
Gene names
ORF Names:MASE_17360 EMBL AFS38962.1
OrganismAlteromonas macleodii ATCC 27126 [Complete proteome] EMBL AFS38962.1
Taxonomic identifier529120 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesAlteromonadaceaeAlteromonas

Protein attributes

Sequence length544 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Pyridoxal phosphate By similarity. RuleBase RU000382

Sequence similarities

Belongs to the group II decarboxylase family. RuleBase RU000382

Ontologies

Sequences

Sequence LengthMass (Da)Tools
J9YC71 [UniParc].

Last modified November 28, 2012. Version 1.
Checksum: B98DDE34B1D367EB

FASTA54460,152
        10         20         30         40         50         60 
MGEAQVSLEH LFRVFTKPEH KDSKLAQIEQ HLSDNILDFL SQHVVTKKTS LEEIEKDFSD 

        70         80         90        100        110        120 
SKVPESPEFV STHAESLLDK LVAHSVNTYS PTFIGHMTSA LPYFHLPLSK LMVGLNQNLV 

       130        140        150        160        170        180 
KIETSKAFTP LERQVLGMMH NLVYDQPQSF YDNHLHSAAH SLGAFCSGGT IANITALWVA 

       190        200        210        220        230        240 
RNKLLGPQKG FSGVAKAGLA AAYRHYNINN LGVMCSKRGH YSLSKAVDVL GLGREQLLTV 

       250        260        270        280        290        300 
PAPKQTLDPA KALRIGKRYQ EEGNKLLAIV GVGGTTETGH VDPLDELADV AKELGCWFHV 

       310        320        330        340        350        360 
DAAWGGATLF SARYRDRLKG IERADSVTID AHKQMYVPMG AGMALFKDPQ NANAVRHHAQ 

       370        380        390        400        410        420 
YILRAGSKDL GATTLEGSRN GMAMMVYSAL HIFGRKGYEL LIDRSIDKAK DFAQMIDKAQ 

       430        440        450        460        470        480 
DFELTTTPIL SLLTYRVCPA EVQEKLKHVN AKTRNAINEK VDALVVAVQK QQREAGKSFV 

       490        500        510        520        530        540 
SRTRLEAPDY PSQCITVFRV VLANPLTSHN DLAAILAEQH LIAKETQAWK ELMDFVRETE 


TVAS 

« Hide

References

[1]"Comparative genomics of two ecotypes of the marine planktonic copiotroph Alteromonas macleodii suggests alternative lifestyles associated with different kinds of particulate organic matter."
Ivars-Martinez E., Martin-Cuadrado A.B., D'Auria G., Mira A., Ferriera S., Johnson J., Friedman R., Rodriguez-Valera F.
ISME J. 2:1194-1212(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 27126 EMBL AFS38962.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP003841 Genomic DNA. Translation: AFS38962.1.
RefSeqYP_006749516.1. NC_018632.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAFS38962; AFS38962; MASE_17360.
GeneID13670382.
KEGGamac:MASE_17360.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01580.

Family and domain databases

Gene3D3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProIPR022517. Asp_decarboxylase_pyridox.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMSSF53383. SSF53383. 1 hit.
TIGRFAMsTIGR03799. NOD_PanD_pyr. 1 hit.
ProtoNetSearch...

Entry information

Entry nameJ9YC71_ALTMA
AccessionPrimary (citable) accession number: J9YC71
Entry history
Integrated into UniProtKB/TrEMBL: November 28, 2012
Last sequence update: November 28, 2012
Last modified: April 16, 2014
This is version 8 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)