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J9YBT2 (J9YBT2_ALTMA) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 8. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
ORF Names:MASE_14020 EMBL AFS38308.1
OrganismAlteromonas macleodii ATCC 27126 [Complete proteome] EMBL AFS38308.1
Taxonomic identifier529120 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesAlteromonadaceaeAlteromonas

Protein attributes

Sequence length683 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the 2-oxoacid dehydrogenase family. RuleBase RU003423

Contains 3 lipoyl-binding domains.

Ontologies

Sequences

Sequence LengthMass (Da)Tools
J9YBT2 [UniParc].

Last modified November 28, 2012. Version 1.
Checksum: 67B13B76E78A3848

FASTA68371,912
        10         20         30         40         50         60 
MSDIQKIIVP DVGGDEVEVI ELCVAVGDNI EADEGVVTVE SDKASMDIPA PFEGEIVSLT 

        70         80         90        100        110        120 
VSVGDKIKEG DVIGEMKVAN GDSADKGASE ENASDESSKE DAPKQEEAPK DESKSEAAPA 

       130        140        150        160        170        180 
ASGSSEVIEV AVPDIGSDDE VDVIDVLVSV GDTIEKEDGL ITLETDKATM DVPSTHAGTV 

       190        200        210        220        230        240 
KEVFISTGDK VKEGTVVIKL EVAGSGSSSS ESASSDASSE ASAPAAQESA KQESAPAASS 

       250        260        270        280        290        300 
GSETIEVAVP DIGEDGEVDV IDVLVSAGDT VEKEDGLITL ETDKATMDVP STHAGTIKEV 

       310        320        330        340        350        360 
FIKAGDKVKQ GTLVVKLETS GGSSSSAAEK PAEAPKQEET KQDSQQEETQ QASQQEASQG 

       370        380        390        400        410        420 
RSPVPPAPEA KNTGKAHASP SVRRIAREFG VDLTQVNGSG PKNRILKEDV QAYVKAELAK 

       430        440        450        460        470        480 
PRTAAASGSA PVGDNVLQIV PVKPVDHSKF GEIEEQKLSR IQKISGPFLH RNWATIPHVT 

       490        500        510        520        530        540 
QFDEADITEV EEFRKEQNAY HAKIKSGLKI TPLVFVMKAV AKALEKYEVF NSSLSDDGES 

       550        560        570        580        590        600 
LIIKKFINIG IAVETPGGLV VPVIRDVNKK GIEQLSQELI DTSKKAREGK LKAADMQGGT 

       610        620        630        640        650        660 
FTISSLGGIG GTAFTPIVNA PEVAILGVSK SEMKPKWNGK EFEPRLMVPL SLSYDHRVID 

       670        680 
GAVGARFSTE VAANLTDLRR IIL 

« Hide

References

[1]"Comparative genomics of two ecotypes of the marine planktonic copiotroph Alteromonas macleodii suggests alternative lifestyles associated with different kinds of particulate organic matter."
Ivars-Martinez E., Martin-Cuadrado A.B., D'Auria G., Mira A., Ferriera S., Johnson J., Friedman R., Rodriguez-Valera F.
ISME J. 2:1194-1212(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 27126 EMBL AFS38308.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP003841 Genomic DNA. Translation: AFS38308.1.
RefSeqYP_006748862.1. NC_018632.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAFS38308; AFS38308; MASE_14020.
GeneID13669711.
KEGGamac:MASE_14020.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK00627.

Family and domain databases

Gene3D3.30.559.10. 1 hit.
4.10.320.10. 1 hit.
InterProIPR003016. 2-oxoA_DH_lipoyl-BS.
IPR001078. 2-oxoacid_DH_actylTfrase.
IPR006256. AcTrfase_Pyrv_DH_cplx.
IPR000089. Biotin_lipoyl.
IPR023213. CAT-like_dom.
IPR004167. E3-bd.
IPR011053. Single_hybrid_motif.
[Graphical view]
PfamPF00198. 2-oxoacid_dh. 1 hit.
PF00364. Biotin_lipoyl. 3 hits.
PF02817. E3_binding. 1 hit.
[Graphical view]
SUPFAMSSF47005. SSF47005. 1 hit.
SSF51230. SSF51230. 3 hits.
TIGRFAMsTIGR01348. PDHac_trf_long. 1 hit.
PROSITEPS50968. BIOTINYL_LIPOYL. 3 hits.
PS00189. LIPOYL. 3 hits.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameJ9YBT2_ALTMA
AccessionPrimary (citable) accession number: J9YBT2
Entry history
Integrated into UniProtKB/TrEMBL: November 28, 2012
Last sequence update: November 28, 2012
Last modified: April 16, 2014
This is version 8 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)