J9Y1X5 (J9Y1X5_ALTMA) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Alanine racemase RuleBase RU000608
EC=5.1.1.1 RuleBase RU000608

Gene names

ORF Names:

MASE_02175 EMBL AFS35999.1

Organism

Alteromonas macleodii ATCC 27126 EMBL AFS35999.1

Taxonomic identifier

529120 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Alteromonadaceae › Alteromonas › Alteromonas macleodii

Protein attributes

Sequence length	358 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	L-alanine = D-alanine. SAAS SAAS020622 RuleBase RU000608
Cofactor	Pyridoxal phosphate By similarity. SAAS SAAS020622 RuleBase RU000608
Pathway	Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1. SAAS SAAS020622
Sequence similarities	Belongs to the alanine racemase family. RuleBase RU004188

Ontologies

Keywords
Ligand	Pyridoxal phosphate SAAS SAAS020622 RuleBase RU000608
Molecular function	Isomerase SAAS SAAS020622 RuleBase RU000608
Gene Ontology (GO)
Biological_process	D-alanine biosynthetic process Inferred from electronic annotation. Source: UniProtKB-UniPathway
Molecular_function	alanine racemase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	J9Y1X5 [UniParc]. Last modified November 28, 2012. Version 1. Checksum: 491EA98233470346	FASTA	358	38,919
	10 20 30 40 50 60 MSRQTQAIIH ADALLHNFKA LAALAPSSQS MAVVKADAYG HGAVNVARIL QHVSSRFAVA 70 80 90 100 110 120 IIEEAIALRD AGISAPIVVL EGAHQAKECQ MAFQHNCILV MHCEEQLTWL ESCPEQQRPH 130 140 150 160 170 180 IWLKVDSGMH RLGFALSDIE GITAKYNHLL SEQTVIATHF ACADDVDNNF TNTQIDAFNQ 190 200 210 220 230 240 VASKLDLPTS VANSPATVNW PASRNAWNRL GVGVYGGAVS TSQNLDIEIY PAMTLRSSVL 250 260 270 280 290 300 AVRTIPAGEG IGYGQTWVAS KPSKIATVGI GYADGYPRHC KNGTPVLIRG KRAYLVGRVS 310 320 330 340 350 MDMITIDVTH IDNVAVGDEV ELWGQNVPIQ EVAANADTID YELMTRVSQR VPRIVKYL

References

[1]

"Comparative genomics of two ecotypes of the marine planktonic copiotroph Alteromonas macleodii suggests alternative lifestyles associated with different kinds of particulate organic matter." Ivars-Martinez E., Martin-Cuadrado A.B., D'Auria G., Mira A., Ferriera S., Johnson J., Friedman R., Rodriguez-Valera F. ISME J. 2:1194-1212(2008) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: ATCC 27126 EMBL AFS35999.1.

[2]

"Complete Genome Sequence of the Copiotrophic Marine Bacterium Alteromonas macleodii Strain ATCC 27126T." Gonzaga A., Lopez-Perez M., Martin-Cuadrado A.B., Ghai R., Rodriguez-Valera F. J. Bacteriol. 194:6998-6998(2012) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: ATCC 27126 EMBL AFS35999.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP003841 Genomic DNA. Translation: AFS35999.1.
RefSeq	YP_006746553.1. NC_018632.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	13667362.
KEGG	amac:MASE_02175.
Phylogenomic databases
KO	K01775.
Enzyme and pathway databases
UniPathway	UPA00042; UER00497.
Family and domain databases
Gene3D	2.40.37.10. 1 hit.
HAMAP	MF_01201. Ala_racemase.
InterPro	IPR000821. Ala_racemase. IPR009006. Ala_racemase/Decarboxylase_C. IPR011079. Ala_racemase_C. IPR001608. Ala_racemase_N. IPR020622. Ala_racemase_pyridoxalP-BS. [Graphical view]
Pfam	PF00842. Ala_racemase_C. 1 hit. PF01168. Ala_racemase_N. 1 hit. [Graphical view]
PRINTS	PR00992. ALARACEMASE.
SMART	SM01005. Ala_racemase_C. 1 hit. [Graphical view]
SUPFAM	SSF50621. Racem_decarbox_C. 1 hit.
TIGRFAMs	TIGR00492. alr. 1 hit.
PROSITE	PS00395. ALANINE_RACEMASE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

J9Y1X5_ALTMA

Accession

Primary (citable) accession number: J9Y1X5

Entry history

Integrated into UniProtKB/TrEMBL:	November 28, 2012
Last sequence update:	November 28, 2012
Last modified:	March 6, 2013
This is version 4 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)