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Protein
Submitted name:

Putative DNA ligase-like protein

Gene

MIP_00683

Organism
Mycobacterium indicus pranii MTCC 9506
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
Putative DNA ligase-like proteinImported
Gene namesi
ORF Names:MIP_00683Imported
OrganismiMycobacterium indicus pranii MTCC 9506Imported
Taxonomic identifieri1232724 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaCorynebacterialesMycobacteriaceaeMycobacteriumMycobacterium avium complex (MAC)
ProteomesiUP000007329 Componenti: Chromosome

Family & Domainsi

Family and domain databases

InterProiIPR002755. DNA_primase_S.
IPR014145. LigD_pol_dom.
[Graphical view]
PfamiPF01896. DNA_primase_S. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.

Sequencei

Sequence statusi: Complete.

J9W6I2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAAAEEIDVD GVAVRLTNPD KVYFPKLGSK GTKRHLVEYY RAVAGGPMLD
60 70 80 90 100
TLRDRPSHLQ RFPDGIDGEE IYQKRIPQHH PDYVETCQVT FPSGRTADAL
110 120 130 140 150
KVTHPAAIVW AAQMGTITLH PWQVRCPDTD HPDELRIDLD PQPGVAFEQA
160 170 180 190 200
RTVAVDVLRP LLDELGLVGY PKTSGGRGIH VFLRIATDWD FVEVRRAGIA
210 220 230 240 250
LAREVERRAP DAVTTAWWKE ERGERIFVDF NQNARDRTMA SAYSVRRTPI
260 270 280 290 300
ATVSMPLTWD ELAGAEPDDY TMATVPELVA RREDPWAAMD DVAQSIASLL
310 320 330 340
EMAEADEERG LGDMPYPPNY PKMPGEPKRV QPSRDTDRRN GKK
Length:343
Mass (Da):38,503
Last modified:November 28, 2012 - v1
Checksum:i059DCC891C989424
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002275 Genomic DNA. Translation: AFS12465.1.
RefSeqiWP_014941156.1. NC_018612.1.
YP_006727554.1. NC_018612.1.

Genome annotation databases

EnsemblBacteriaiAFS12465; AFS12465; MIP_00683.
KEGGimid:MIP_00683.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002275 Genomic DNA. Translation: AFS12465.1.
RefSeqiWP_014941156.1. NC_018612.1.
YP_006727554.1. NC_018612.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAFS12465; AFS12465; MIP_00683.
KEGGimid:MIP_00683.

Family and domain databases

InterProiIPR002755. DNA_primase_S.
IPR014145. LigD_pol_dom.
[Graphical view]
PfamiPF01896. DNA_primase_S. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Molecular analysis of a leprosy immunotherapeutic bacillus provides insights into Mycobacterium evolution."
    Ahmed N., Saini V., Raghuvanshi S., Khurana J.P., Tyagi A.K., Tyagi A.K., Hasnain S.E.
    PLoS ONE 2:E968-E968(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: MTCC 9506Imported.
  2. "Massive gene acquisitions in Mycobacterium indicus pranii provide a perspective on mycobacterial evolution."
    Saini V., Raghuvanshi S., Khurana J.P., Ahmed N., Hasnain S.E., Tyagi A.K., Tyagi A.K.
    Nucleic Acids Res. 40:10832-10850(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: MTCC 9506Imported.

Entry informationi

Entry nameiJ9W6I2_9MYCO
AccessioniPrimary (citable) accession number: J9W6I2
Entry historyi
Integrated into UniProtKB/TrEMBL: November 28, 2012
Last sequence update: November 28, 2012
Last modified: June 24, 2015
This is version 15 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.